Click here to switch to the map view.

The map label for this gene is (hspc4-1 [H]

Identifier: 126445698

GI number: 126445698

Start: 2254816

End: 2255241

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: BMA10247_A2325

Alternate gene names: 126445698

Gene position: 2255241-2254816 (Counterclockwise)

Preceding gene: 126447061

Following gene: 126447253

Centisome position: 95.86

GC content: 62.21

Gene sequence:

>426_bases
GTGACGCGTTACGACCCGTTTTCGCTGGAGCCTGTGTCCGATCTGTTCCGAGGTTTGTTCCGTCCGCTGCGCGGCATCGC
GGACGCCGACGACGAGAAGCTCGCGTCGATGAAGATCGACGTGACCGAAAACGACCAGGCCTACGCCGTCAAGGCCGAGC
TGCCGGGCGTCGACAAGAATGACATCAACGTGCAGATCGACGGCAATACCGTGTCGATTTCCGCGAAGGTCGAGCGAAAC
AAGGAACTGAAGGAAGGCGAGCGCGTGATTCGGCGCGAGCGCTATTCGGGCGAGTTCGCGCGAACCTTCTCGCTCGCGAA
CGAACTCGACCGCGACGCGGCGAGCGCGCAGTATCAGGACGGCGTGCTGTCGCTGACGCTGCCGAAGAAGGCGAGCTCGG
AGAAGAAGAAGCTGACGATCGGCTGA

Upstream 100 bases:

>100_bases
ATCATCGATCAACGGGCGTCCGGCATGCGCCGGGCGCCGTCCGTGGCGTCGGCCGCGCGGGGTGCGCGGCCACGACTTTC
AGGAGAGAGCAATGAGCAAT

Downstream 100 bases:

>100_bases
GCATGCGCGCCGCGCCGAACGCGGCGCCGCGCGATGGCGGGCCGGCGCGCGGCGCGCGGCCGCGCCGTCACGGATGCGCG
GCCGGCTTGCCGACGGTCTG

Product: stress response protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MTRYDPFSLEPVSDLFRGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERN
KELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG

Sequences:

>Translated_141_residues
MTRYDPFSLEPVSDLFRGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERN
KELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>Mature_140_residues
TRYDPFSLEPVSDLFRGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNK
ELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 15754; Mature: 15623

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYDPFSLEPVSDLFRGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKN
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCC
DINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQD
CEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
GVLSLTLPKKASSEKKKLTIG
CEEEEEECCCCCCCCCEECCC
>Mature Secondary Structure 
TRYDPFSLEPVSDLFRGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKN
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCC
DINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQD
CEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
GVLSLTLPKKASSEKKKLTIG
CEEEEEECCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA