Click here to switch to the map view.

The map label for this gene is hrpA1 [H]

Identifier: 126445193

GI number: 126445193

Start: 2179415

End: 2181220

Strand: Reverse

Name: hrpA1 [H]

Synonym: BURPS668_A2249

Alternate gene names: 126445193

Gene position: 2181220-2179415 (Counterclockwise)

Preceding gene: 126445536

Following gene: 126444806

Centisome position: 69.74

GC content: 69.16

Gene sequence:

>1806_bases
ATGAAGGCCAAGATTCCCGTTTTGCTGTCCCTGCTGTGCTCGCTCGCGAGCCTTTCCGTCGACGCCGCGCCGATCCGCTG
GCGCAGCGCCGACATCCAGTACGCGGCCGAGGGCAAGGACGTGAAGGACGTGCTGCGCGATCTCGCCGCGAGCCAGAACA
TCGCGGCGAACGTCGCGCCCGGCGTGAGCGGCGCGGTGAGCGGCAAGATGAAGATGTCGCCGCAGCGCTTTCTCGACACG
CTCGCCGCGTCGTTCGGCTTTGTCTGGTATTACGACGGCACCGTGCTGTACGTGACGCCCGCGAGCGACATGAAGAGCAC
GCTCGTCAAGCTCGATCACGCGAACACGGGCGACCTGCGCGACCTGCTCGAGCAGATGAAGGTCGCCGATTCGCGCTATC
CGATCACCTACAACGCGCAGCAGCGCACCGCGCTCGTCGCGGGGCCGGCGCGCTACGTCGAGCTCGTGACGAGCGTCGCC
GCGCGGCTCGACGAGAATTCCGCGCGCACGGGCGGCACGCAGATCCGCGTGTTCTCGCTGAAGCACGCATGGGCCGCGGA
TCGCGACGTGAACGTCGACGGCACGGCGGTATCGATGCCGGGCGTGGCTTCGCTGCTGAACCGGATGTATCACCCGGGCG
AAGGCAAGCGCGCATCGCAGACGACGCTCGGCAAGCCGATCAGCCGCGCCGCGCCGATGACGGATCTCGGCGGCGGGCGC
AGCGGCGTGCCGCCGCCGCCGCTGCCGCCGTACATGCAGGCCGCGCAGTCGGGCGACGGCGCGGCCATGCCGGCGGGCGT
GCCCGGCGTGCCCGGCGGCGATCCGCGCCCGAGCGGCATGGTCGCCGCCGCGATCGCGAATCCGGGCGCGGCGCGCGCGC
CGGGCGGCGGGATGCCCGATGCGAACGGCGTGCCCGCCGGCGCGGGCGACGCGGCGGATCTGCCGGTGATCCAGGCCGAT
CCGCGCACGAACTCGATCCTCGTGCGCGACGTGCCCGAGCACATGGCGCAGTATCCGGACCTGATCGCGCTCCTCGACGT
GAAGCCGCGCCTGATCGAGATCGAGGCGCGCATCATCGAGATCGACGAAGGCGCGCTCAAGCAGCTCGGCGTCGACTGGC
GCGCGCACAACAGCCATTTCGACCTGCAGACGGGCACGGGGCTCACGTCGCAGAACGGCTATGCGAACGGCACGCTGAAC
CCCACGTTCGGCTCGATCACGCTCTCCGGCAACGATTCGGTCGGCGTGCCGGCGAGCCCGCTCGGGCTGTCGCTGACGGC
CGTGCTCGGCGACGCCGGCCGCTATCTGCTCGCGCGGATCAACGCGCTCGAATCGTCGAACCAGGCGCGCACCGACGCGA
GCCCGAAGGTCACGACGCTCGACAACGTCGAGGCGGTGATGGACAACAAGAAGCAGTTCTTCGTGCGCGTGGCGGGCTAC
ACGTCGGCCGACCTGTACAGCATCTCGACGGGCGTGTCGCTGCGCGTGCTGCCGATGGTCGTCGACGAAGGCGGGCGCAC
GCAGATCAAGCTCGACGTGCGGATCGTCGACGGCGAGCTGTCGCAGCAGACGGTCGACAACATTCCGGTGATCGTGTCGA
ACGAGATCAACACGCAGGCGTTCATCGAGCAGGGGCAGGCGTTGCTGATCGCGGGCTACAAGGTGGATGCGCGCTCGAGC
ACGCAATCGGGGGTGCCGGTGCTGTCGAAGCTGCCGCTCGTCGGCGCGCTGTTTCGTTCGACCGACAAGCAGAACAGCCA
CAGCGAGCGGCTCTTTCTCGTGACGCCGAGAGTGATCGAGCCTTGA

Upstream 100 bases:

>100_bases
CGTGGCCGCCGCCGCGCGGCGCTGCGGTTAACTGCAGGGGTCTCCCATTCGCGGCGCGCGCCCGTCCGAGCGACGGCGCG
CGCCCCCACCGGACGGACCC

Downstream 100 bases:

>100_bases
GCGGGCCGCGCGCTCGCCGCGCCGCGCCGATCGGGCGGCGTGCGCGCGCGGGCGGTGCGTGACGCGTTCATCGGCCGAGA
TAGAGATAGAGCGACGCGAG

Product: YscC/HrcC family type III secretion outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MKAKIPVLLSLLCSLASLSVDAAPIRWRSADIQYAAEGKDVKDVLRDLAASQNIAANVAPGVSGAVSGKMKMSPQRFLDT
LAASFGFVWYYDGTVLYVTPASDMKSTLVKLDHANTGDLRDLLEQMKVADSRYPITYNAQQRTALVAGPARYVELVTSVA
ARLDENSARTGGTQIRVFSLKHAWAADRDVNVDGTAVSMPGVASLLNRMYHPGEGKRASQTTLGKPISRAAPMTDLGGGR
SGVPPPPLPPYMQAAQSGDGAAMPAGVPGVPGGDPRPSGMVAAAIANPGAARAPGGGMPDANGVPAGAGDAADLPVIQAD
PRTNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIEIDEGALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLN
PTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGY
TSADLYSISTGVSLRVLPMVVDEGGRTQIKLDVRIVDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSS
TQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP

Sequences:

>Translated_601_residues
MKAKIPVLLSLLCSLASLSVDAAPIRWRSADIQYAAEGKDVKDVLRDLAASQNIAANVAPGVSGAVSGKMKMSPQRFLDT
LAASFGFVWYYDGTVLYVTPASDMKSTLVKLDHANTGDLRDLLEQMKVADSRYPITYNAQQRTALVAGPARYVELVTSVA
ARLDENSARTGGTQIRVFSLKHAWAADRDVNVDGTAVSMPGVASLLNRMYHPGEGKRASQTTLGKPISRAAPMTDLGGGR
SGVPPPPLPPYMQAAQSGDGAAMPAGVPGVPGGDPRPSGMVAAAIANPGAARAPGGGMPDANGVPAGAGDAADLPVIQAD
PRTNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIEIDEGALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLN
PTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGY
TSADLYSISTGVSLRVLPMVVDEGGRTQIKLDVRIVDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSS
TQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP
>Mature_601_residues
MKAKIPVLLSLLCSLASLSVDAAPIRWRSADIQYAAEGKDVKDVLRDLAASQNIAANVAPGVSGAVSGKMKMSPQRFLDT
LAASFGFVWYYDGTVLYVTPASDMKSTLVKLDHANTGDLRDLLEQMKVADSRYPITYNAQQRTALVAGPARYVELVTSVA
ARLDENSARTGGTQIRVFSLKHAWAADRDVNVDGTAVSMPGVASLLNRMYHPGEGKRASQTTLGKPISRAAPMTDLGGGR
SGVPPPPLPPYMQAAQSGDGAAMPAGVPGVPGGDPRPSGMVAAAIANPGAARAPGGGMPDANGVPAGAGDAADLPVIQAD
PRTNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIEIDEGALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLN
PTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGY
TSADLYSISTGVSLRVLPMVVDEGGRTQIKLDVRIVDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSS
TQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP

Specific function: Necessary for both basic pathogenicity and the induction of the hypersensitive response in resistant plants. Could be a part of a specific transport apparatus or a secretion apparatus that is required for pathogenicity. Hrp proteins may form a complex (tu

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=286, Percent_Identity=27.2727272727273, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87082242, Length=307, Percent_Identity=27.3615635179153, Blast_Score=74, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR004845
- InterPro:   IPR003522 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 63315; Mature: 63315

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKIPVLLSLLCSLASLSVDAAPIRWRSADIQYAAEGKDVKDVLRDLAASQNIAANVAP
CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCHHHHHHHHHCCCCCEEECCC
GVSGAVSGKMKMSPQRFLDTLAASFGFVWYYDGTVLYVTPASDMKSTLVKLDHANTGDLR
CCCCCCCCCEECCHHHHHHHHHHHCCEEEEECCEEEEEECCHHHHHHHEEECCCCCCHHH
DLLEQMKVADSRYPITYNAQQRTALVAGPARYVELVTSVAARLDENSARTGGTQIRVFSL
HHHHHHHHCCCCCCEEECCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
KHAWAADRDVNVDGTAVSMPGVASLLNRMYHPGEGKRASQTTLGKPISRAAPMTDLGGGR
ECCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCC
SGVPPPPLPPYMQAAQSGDGAAMPAGVPGVPGGDPRPSGMVAAAIANPGAARAPGGGMPD
CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
ANGVPAGAGDAADLPVIQADPRTNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIE
CCCCCCCCCCCCCCCEEECCCCCCEEEEECCHHHHHCCCCEEEEECCCCEEEEEEEEEEE
IDEGALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASP
ECCHHHHHHCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
LGLSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGY
CCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHCCCEEEEEEEECC
TSADLYSISTGVSLRVLPMVVDEGGRTQIKLDVRIVDGELSQQTVDNIPVIVSNEINTQA
CCCCEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCHHHHCCCCEEEECCCCHHH
FIEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIE
HHHCCCEEEEEEEEECCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCC
P
C
>Mature Secondary Structure
MKAKIPVLLSLLCSLASLSVDAAPIRWRSADIQYAAEGKDVKDVLRDLAASQNIAANVAP
CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCHHHHHHHHHCCCCCEEECCC
GVSGAVSGKMKMSPQRFLDTLAASFGFVWYYDGTVLYVTPASDMKSTLVKLDHANTGDLR
CCCCCCCCCEECCHHHHHHHHHHHCCEEEEECCEEEEEECCHHHHHHHEEECCCCCCHHH
DLLEQMKVADSRYPITYNAQQRTALVAGPARYVELVTSVAARLDENSARTGGTQIRVFSL
HHHHHHHHCCCCCCEEECCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
KHAWAADRDVNVDGTAVSMPGVASLLNRMYHPGEGKRASQTTLGKPISRAAPMTDLGGGR
ECCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCC
SGVPPPPLPPYMQAAQSGDGAAMPAGVPGVPGGDPRPSGMVAAAIANPGAARAPGGGMPD
CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
ANGVPAGAGDAADLPVIQADPRTNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIE
CCCCCCCCCCCCCCCEEECCCCCCEEEEECCHHHHHCCCCEEEEECCCCEEEEEEEEEEE
IDEGALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASP
ECCHHHHHHCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
LGLSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGY
CCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHCCCEEEEEEEECC
TSADLYSISTGVSLRVLPMVVDEGGRTQIKLDVRIVDGELSQQTVDNIPVIVSNEINTQA
CCCCEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCHHHHCCCCEEEECCCCHHH
FIEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIE
HHHCCCEEEEEEEEECCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1472717 [H]