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The map label for this gene is cph2 [H]

Identifier: 126444744

GI number: 126444744

Start: 243759

End: 245147

Strand: Reverse

Name: cph2 [H]

Synonym: BURPS668_A0276

Alternate gene names: 126444744

Gene position: 245147-243759 (Counterclockwise)

Preceding gene: 126442326

Following gene: 126443625

Centisome position: 7.84

GC content: 69.47

Gene sequence:

>1389_bases
ATGGATGGTTTCCTCATTCAACGCCCGTCTCGCCTGCAGACGCTTGGGGCCGGAACATTCGCGTTGCTGACGCTGGGCGC
GCTCGTGGCCACCGCGCCGCACGCGGATCTGCGGCTGCCGCCGATCGAGCCGTTCCTGCCGATGTGCGCGCTGACCGTGT
TCAGCACGTCGCTCATCGCGGCCTTCCTGCTCGGCGCGCAGTTCATCGTGATGCGCCGCCCGATTCTCGGCACGCTGGCC
GGCGCGTATGCCTTCGCGGCGATCACGGTCGCGCTTCAACTGCTCGCGTTTCCCGGCGTCTTCGCGCCCACCGGCCTGCT
CGGCGCGCGGCATGACAGCGCCGCGTGGCTATGGACCTTCTGGCACGGCGGCTTCCCGCTGTTCGTCGTGCTGGCGATGC
TGACGCGATACCGGCTCGCGAAGCGGCTCAGCAACACCCGCCACGTCGGCCGCTGGCTCGCGACATTGGCCGGCGTGCCG
ATCGCGGTCGCGATCGCGCTCGGCCTCGTCGCGCTGCGCGCGGATCTGCCCGCGCCGTTCGGCCCGTCGCTCGACAATGC
GCTGCGCGCCGCCGATCCGGTGGCGATCGTCATCTGGACGATCAACCTCGGCGCGATCGCCGCCGCGCTGTTCGTCGGCC
GGATGAGGACGATGCTCGACATCTGGCTCGTCGTCGTGCTGCTCGCCGGCTTCACCGATACCAGCCTGAATCTGCTGAGC
ACCGCGCGCTTCACCGCCGGCTGGTACGTCGCGCGCCTGTTCAGCATGATCGCGCCGGGCATCCTCGTCTGCGTGCTCGT
CTGGGAAGTGACGGTGCTGTACCGGCGGCTGTTCGACGCGCACGCATCGCTCATGCGGACCGCTTCGCACGACGCGCTGA
CGATGGTGTACAACCGCAGCTATTTCAACGAACAGTTCGAGCGCGCCTTTCACTACGCACGCCGGCATAACGCGCCCCTC
GCGCTCGTGATGGTCGACGTCGATCATTTCAAGCAGTACAACGATACGTTCGGTCACCTGCAAGGGGACACGTGCCTCGC
CGCCGTCGCGGCCGCGCTGTCCGGCGTCGCGGGCCGTGCGAACGATTTCGTCGCGCGCTACGGCGGCGAGGAATTCGCCG
TCGTGCTGCCCGGGGCGGACGAACGCGGCGCGGCGACGATCGCCGAACGGGCACGGCAGGCCGTCGAGCGGCTGCGCATC
GCCGCCGACACGGCGCCCGGCTATGTGACGGTGAGCGCCGGCTACGCGGCGAGCAGCGGCAATCCGTTCGAAACGCCCGG
TGCGCTGATCGCGGCCGCCGACGCGGCGCTCTACCGCGCGAAGATGCTGGGGCGCAACGTCAGCGCCGCGCCCCACCACG
ACATGCAGGATACGGCGATGCGCGACTGA

Upstream 100 bases:

>100_bases
CGTCGATTTCACCCGGTGCGCGCGCGTTCCTGGTCCGCTTTCCACACGACATTCGCCGCCCATTGGATGGCGGCGCCGGC
TTTCGCGTTCGGGAGATCCC

Downstream 100 bases:

>100_bases
CGCGCGGCGCGCGGGCCGCCCGGCCGCCCGGCCGCCCTTAAGCATACTTATCGCCGACCACGTCGCGAATCGGGTGCGTA
TCGTAGACGATGACCATCCG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MDGFLIQRPSRLQTLGAGTFALLTLGALVATAPHADLRLPPIEPFLPMCALTVFSTSLIAAFLLGAQFIVMRRPILGTLA
GAYAFAAITVALQLLAFPGVFAPTGLLGARHDSAAWLWTFWHGGFPLFVVLAMLTRYRLAKRLSNTRHVGRWLATLAGVP
IAVAIALGLVALRADLPAPFGPSLDNALRAADPVAIVIWTINLGAIAAALFVGRMRTMLDIWLVVVLLAGFTDTSLNLLS
TARFTAGWYVARLFSMIAPGILVCVLVWEVTVLYRRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNAPL
ALVMVDVDHFKQYNDTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQAVERLRI
AADTAPGYVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRNVSAAPHHDMQDTAMRD

Sequences:

>Translated_462_residues
MDGFLIQRPSRLQTLGAGTFALLTLGALVATAPHADLRLPPIEPFLPMCALTVFSTSLIAAFLLGAQFIVMRRPILGTLA
GAYAFAAITVALQLLAFPGVFAPTGLLGARHDSAAWLWTFWHGGFPLFVVLAMLTRYRLAKRLSNTRHVGRWLATLAGVP
IAVAIALGLVALRADLPAPFGPSLDNALRAADPVAIVIWTINLGAIAAALFVGRMRTMLDIWLVVVLLAGFTDTSLNLLS
TARFTAGWYVARLFSMIAPGILVCVLVWEVTVLYRRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNAPL
ALVMVDVDHFKQYNDTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQAVERLRI
AADTAPGYVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRNVSAAPHHDMQDTAMRD
>Mature_462_residues
MDGFLIQRPSRLQTLGAGTFALLTLGALVATAPHADLRLPPIEPFLPMCALTVFSTSLIAAFLLGAQFIVMRRPILGTLA
GAYAFAAITVALQLLAFPGVFAPTGLLGARHDSAAWLWTFWHGGFPLFVVLAMLTRYRLAKRLSNTRHVGRWLATLAGVP
IAVAIALGLVALRADLPAPFGPSLDNALRAADPVAIVIWTINLGAIAAALFVGRMRTMLDIWLVVVLLAGFTDTSLNLLS
TARFTAGWYVARLFSMIAPGILVCVLVWEVTVLYRRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNAPL
ALVMVDVDHFKQYNDTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQAVERLRI
AADTAPGYVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRNVSAAPHHDMQDTAMRD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=260, Percent_Identity=31.9230769230769, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI145693134, Length=181, Percent_Identity=38.121546961326, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1786584, Length=287, Percent_Identity=31.0104529616725, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=38.9221556886228, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI87081881, Length=188, Percent_Identity=36.7021276595745, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787802, Length=171, Percent_Identity=33.9181286549708, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788085, Length=466, Percent_Identity=26.3948497854077, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788381, Length=213, Percent_Identity=29.5774647887324, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=35.8974358974359, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87081974, Length=184, Percent_Identity=28.804347826087, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081977, Length=169, Percent_Identity=30.1775147928994, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=30.952380952381, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788956, Length=221, Percent_Identity=28.0542986425339, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 49661; Mature: 49661

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGFLIQRPSRLQTLGAGTFALLTLGALVATAPHADLRLPPIEPFLPMCALTVFSTSLIA
CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AFLLGAQFIVMRRPILGTLAGAYAFAAITVALQLLAFPGVFAPTGLLGARHDSAAWLWTF
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
WHGGFPLFVVLAMLTRYRLAKRLSNTRHVGRWLATLAGVPIAVAIALGLVALRADLPAPF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
GPSLDNALRAADPVAIVIWTINLGAIAAALFVGRMRTMLDIWLVVVLLAGFTDTSLNLLS
CCCHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
TARFTAGWYVARLFSMIAPGILVCVLVWEVTVLYRRLFDAHASLMRTASHDALTMVYNRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHH
YFNEQFERAFHYARRHNAPLALVMVDVDHFKQYNDTFGHLQGDTCLAAVAAALSGVAGRA
HHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCCCH
NDFVARYGGEEFAVVLPGADERGAATIAERARQAVERLRIAADTAPGYVTVSAGYAASSG
HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
NPFETPGALIAAADAALYRAKMLGRNVSAAPHHDMQDTAMRD
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MDGFLIQRPSRLQTLGAGTFALLTLGALVATAPHADLRLPPIEPFLPMCALTVFSTSLIA
CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AFLLGAQFIVMRRPILGTLAGAYAFAAITVALQLLAFPGVFAPTGLLGARHDSAAWLWTF
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
WHGGFPLFVVLAMLTRYRLAKRLSNTRHVGRWLATLAGVPIAVAIALGLVALRADLPAPF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
GPSLDNALRAADPVAIVIWTINLGAIAAALFVGRMRTMLDIWLVVVLLAGFTDTSLNLLS
CCCHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
TARFTAGWYVARLFSMIAPGILVCVLVWEVTVLYRRLFDAHASLMRTASHDALTMVYNRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHH
YFNEQFERAFHYARRHNAPLALVMVDVDHFKQYNDTFGHLQGDTCLAAVAAALSGVAGRA
HHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCCCH
NDFVARYGGEEFAVVLPGADERGAATIAERARQAVERLRIAADTAPGYVTVSAGYAASSG
HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
NPFETPGALIAAADAALYRAKMLGRNVSAAPHHDMQDTAMRD
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]