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The map label for this gene is ykgD [C]

Identifier: 126444709

GI number: 126444709

Start: 653807

End: 654709

Strand: Reverse

Name: ykgD [C]

Synonym: BURPS668_A0682

Alternate gene names: 126444709

Gene position: 654709-653807 (Counterclockwise)

Preceding gene: 126443815

Following gene: 126443843

Centisome position: 20.93

GC content: 70.32

Gene sequence:

>903_bases
ATGAGCTCGCCCGCACGCCATTCGCCGCCGCAAACGATCACGAAGGACTCGCTCGGCTGCACGTCGAGCGGCTTTCTGAC
GGATATCGAACGCGAAACGGCGCTCTTGCGCTTCTATCGGAAACACACGACAGGCCTGCGCCTCGAGCAGGTCTCGACAC
CCGCGTCCGGGCGCGGCGTGCTGATCGGCATCTCGCTGTCCGGCGGCCATCGCCGCAAGATCCTCCGCGGCCGCCGGTCG
GTGACGCACGACTTCCGCGCCGATTCGGTCTACGTGCGCGATTTCTCCGAAGACTATCGCGCGGACATGATGTCGGATTT
CGACTTCGCGCTCGTCGAGCTGTCGCCGTCGTTCATCGACGGCCTCGCCGAGCGCGGCCGCCCGGCGCGCATCGCCGGCG
TCGCGCCGACGCTCGCGCACGACGACCGCCTGCTCGGCGAGCTCGGGCGCGCGCTCGCGCTCGCGCTGCAGTCGGGCGAC
GCGGCCGATGCCATGCTCGTCGATCAATTGGGCATCGCGATCGGCACGCACGCGATGCACGCGTACGGCGGCCTGCGCGC
CGACGAGCCGAAGCAGCGGCGGCGCCTGTCGGCGCCGCTCGAGCGGCGCGCGAAGGAGATGCTGGCGGCGGGCGCGACGT
CGGTGGACGAAATCGCGCGTGCATGCCGCGTGTCGCGCGGCTACTTCATCAACGCGTTCAGCGCGACGACGGGCAAGACG
CCGCATCAGTGGCTGATCGAGCAACGCATCGAAGCGGCGAAGCATCTGCTCGCGCACGGCGACTGGACGCTCGCGCGCAT
CGCCGAGCATTGCGGCTTCTCGAGCCAGAGCCATTTCACGCAGAGCTTCGCGAAGGCCATCGGCCTGCCGCCCGGCGCGT
GGCGCCGGCGCGCGCGCGCCTGA

Upstream 100 bases:

>100_bases
TGCGTCTGCGCGCGGCGAGTGCCGATGCGGCGCGCCGCCGTATGCCGCGCGCGGGCGAGCGCTCGCGTCACGTCCCGCCC
ACCGCTTCCGGAACTGTTCC

Downstream 100 bases:

>100_bases
TCCGGCTAGGCGTGCGGCCACGCGCGCGCATCGCCCCGCGTGCGAGCGAGCGTTTCGGCTATGGGCGGTTCACACGGCGC
CACGCGGCGGGCGGCGTGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein; AraC Family Regulatory Protein; AraC Family Transcription Regulator Protein; AraC-Family Transcriptional Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Protein AraC Family; Regulatory Protein PocR; ThiJ/PfpI Domain-Containing Protein; AraC Family Helix-Turn-Helix Transcriptional Regulator; AraC/XylS Family Transcriptional Regulator; AraC Family Transcription Regulator; AraC-Like Transcriptional Regulator

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSSPARHSPPQTITKDSLGCTSSGFLTDIERETALLRFYRKHTTGLRLEQVSTPASGRGVLIGISLSGGHRRKILRGRRS
VTHDFRADSVYVRDFSEDYRADMMSDFDFALVELSPSFIDGLAERGRPARIAGVAPTLAHDDRLLGELGRALALALQSGD
AADAMLVDQLGIAIGTHAMHAYGGLRADEPKQRRRLSAPLERRAKEMLAAGATSVDEIARACRVSRGYFINAFSATTGKT
PHQWLIEQRIEAAKHLLAHGDWTLARIAEHCGFSSQSHFTQSFAKAIGLPPGAWRRRARA

Sequences:

>Translated_300_residues
MSSPARHSPPQTITKDSLGCTSSGFLTDIERETALLRFYRKHTTGLRLEQVSTPASGRGVLIGISLSGGHRRKILRGRRS
VTHDFRADSVYVRDFSEDYRADMMSDFDFALVELSPSFIDGLAERGRPARIAGVAPTLAHDDRLLGELGRALALALQSGD
AADAMLVDQLGIAIGTHAMHAYGGLRADEPKQRRRLSAPLERRAKEMLAAGATSVDEIARACRVSRGYFINAFSATTGKT
PHQWLIEQRIEAAKHLLAHGDWTLARIAEHCGFSSQSHFTQSFAKAIGLPPGAWRRRARA
>Mature_299_residues
SSPARHSPPQTITKDSLGCTSSGFLTDIERETALLRFYRKHTTGLRLEQVSTPASGRGVLIGISLSGGHRRKILRGRRSV
THDFRADSVYVRDFSEDYRADMMSDFDFALVELSPSFIDGLAERGRPARIAGVAPTLAHDDRLLGELGRALALALQSGDA
ADAMLVDQLGIAIGTHAMHAYGGLRADEPKQRRRLSAPLERRAKEMLAAGATSVDEIARACRVSRGYFINAFSATTGKTP
HQWLIEQRIEAAKHLLAHGDWTLARIAEHCGFSSQSHFTQSFAKAIGLPPGAWRRRARA

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32855; Mature: 32724

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPARHSPPQTITKDSLGCTSSGFLTDIERETALLRFYRKHTTGLRLEQVSTPASGRGV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEE
LIGISLSGGHRRKILRGRRSVTHDFRADSVYVRDFSEDYRADMMSDFDFALVELSPSFID
EEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEEECCHHHHH
GLAERGRPARIAGVAPTLAHDDRLLGELGRALALALQSGDAADAMLVDQLGIAIGTHAMH
HHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AYGGLRADEPKQRRRLSAPLERRAKEMLAAGATSVDEIARACRVSRGYFINAFSATTGKT
HHCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
PHQWLIEQRIEAAKHLLAHGDWTLARIAEHCGFSSQSHFTQSFAKAIGLPPGAWRRRARA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure 
SSPARHSPPQTITKDSLGCTSSGFLTDIERETALLRFYRKHTTGLRLEQVSTPASGRGV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEE
LIGISLSGGHRRKILRGRRSVTHDFRADSVYVRDFSEDYRADMMSDFDFALVELSPSFID
EEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEEECCHHHHH
GLAERGRPARIAGVAPTLAHDDRLLGELGRALALALQSGDAADAMLVDQLGIAIGTHAMH
HHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AYGGLRADEPKQRRRLSAPLERRAKEMLAAGATSVDEIARACRVSRGYFINAFSATTGKT
HHCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
PHQWLIEQRIEAAKHLLAHGDWTLARIAEHCGFSSQSHFTQSFAKAIGLPPGAWRRRARA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA