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The map label for this gene is xerD [C]

Identifier: 126444313

GI number: 126444313

Start: 1282

End: 2325

Strand: Reverse

Name: xerD [C]

Synonym: BURPS668_A0002

Alternate gene names: 126444313

Gene position: 2325-1282 (Counterclockwise)

Preceding gene: 126443504

Following gene: NA

Centisome position: 0.07

GC content: 64.37

Gene sequence:

>1044_bases
ATGTCGCTGCCCATTCTGACGAGTCCCCCTTCGCCGCCCGATATCCCGAGCGATCTGTTCGATCGCGATACGTCGGACTG
GCTCAACCATCCGGACACCGCATTCGATGCGTGGCTGGCCGCCCAGGAATTTCGCCGGTCGTCAGCCGACGTCTACCGCG
CGCAATGGGGTGCGTTTCTCGGCTGGCTCGCGAAACGGCAAAAGAACCTCGCGACGGTCGACACCGAGACGATCGCCCTT
TTCGTCGGCGAGCTGCCGATCAAGAAGACGCAGCGAGTCCGCTACTTGAGGCTGATCGAGCGCGTGCTCGATCACGTGCG
CAAGAACGAATTCGGTTCGACGAATCCTGCCCGTTTCATTGCTCAGGATGGCGAAGCAACTTGGCGCACCGCGCGCGACA
ACGAGCCGACGAGCTTTCTCGCACCGGCCGAACGCGCCGCGCTGCTTGCCTATCTGTTCTCCCCACTGCCCGCGGCAGGC
GCGGCGCTCTGGAAGGAACGCCGCGATCGCGCGCTGATTGCCGCGTTCCTCGGCGGCGGACTGAAGACGGGCGAGGCGCG
AGCGCTTACGATTAGTTGCGTCAAACTCGGATCGACCATGCTGACGATTCCGGCGGCTCAGCCGGAATTCACGCGCGAAA
CGCATCTCGCGTCGTTCGCGATCGCGCTGTTCGACGCGTGGCTCGCCGAGCGTCAGCGCTGCGGCATTCCGGGCGAGCTT
GTCTTTCCCGCCTCGCAATCCGGGCGACCGATGCACAAGGCGACGATGCTGCGCGCGGTCGATGCGATCGTCGACGCGGC
CGACATCGCGCAATCGCGCACCGCACGCGCCAGCCCGCAGACGTTGCGCAACACGTTCGCGGCCGAACTGTTCGAAAACG
GCGTCGAGCCGGAGAAAGTCGGTCAGTGGCTGGGGTTCGCCCAGCCGATTTCGTCGAATCGTCTGCATCGGGCCTGGAAG
AATTGGCGGGAAAGCCTCGCCAGTGCGCTACCCGATGCCGAATCGCTCACCGATGAAATATCGACCGAGCCAAGCCAGGC
TTGA

Upstream 100 bases:

>100_bases
GGCGGTTCGCCCGCCGCCGGGTTCTTGCCGCTGACTCGAAAACTCTTTGTCGAGCGAACGCGACACGCTATGATGAATTG
CAACTAACGGGATAAATGAC

Downstream 100 bases:

>100_bases
AATCCGCGTTTTCGATCTCCCGAAAACGCTCACCTTTCCTTATTTTCCGGGTCCCGAAAATCCTCACCTTTGAGGACTTC
GGGGCGCCTTCCGTCATGTT

Product: integrase

Products: NA

Alternate protein names: Phage Integrase Family Protein; Integrase/Recombinase Protein; Phage Integrase; Integrase/Recombinase; DNA Integration/Recombination/Inversion Protein; Integrase; Phage Integrase / Tyr Recombinase Protein; Site-Specific Recombinase Phage Integrase Family Protein; Integrase Or Site-Specific Recombinase

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MSLPILTSPPSPPDIPSDLFDRDTSDWLNHPDTAFDAWLAAQEFRRSSADVYRAQWGAFLGWLAKRQKNLATVDTETIAL
FVGELPIKKTQRVRYLRLIERVLDHVRKNEFGSTNPARFIAQDGEATWRTARDNEPTSFLAPAERAALLAYLFSPLPAAG
AALWKERRDRALIAAFLGGGLKTGEARALTISCVKLGSTMLTIPAAQPEFTRETHLASFAIALFDAWLAERQRCGIPGEL
VFPASQSGRPMHKATMLRAVDAIVDAADIAQSRTARASPQTLRNTFAAELFENGVEPEKVGQWLGFAQPISSNRLHRAWK
NWRESLASALPDAESLTDEISTEPSQA

Sequences:

>Translated_347_residues
MSLPILTSPPSPPDIPSDLFDRDTSDWLNHPDTAFDAWLAAQEFRRSSADVYRAQWGAFLGWLAKRQKNLATVDTETIAL
FVGELPIKKTQRVRYLRLIERVLDHVRKNEFGSTNPARFIAQDGEATWRTARDNEPTSFLAPAERAALLAYLFSPLPAAG
AALWKERRDRALIAAFLGGGLKTGEARALTISCVKLGSTMLTIPAAQPEFTRETHLASFAIALFDAWLAERQRCGIPGEL
VFPASQSGRPMHKATMLRAVDAIVDAADIAQSRTARASPQTLRNTFAAELFENGVEPEKVGQWLGFAQPISSNRLHRAWK
NWRESLASALPDAESLTDEISTEPSQA
>Mature_346_residues
SLPILTSPPSPPDIPSDLFDRDTSDWLNHPDTAFDAWLAAQEFRRSSADVYRAQWGAFLGWLAKRQKNLATVDTETIALF
VGELPIKKTQRVRYLRLIERVLDHVRKNEFGSTNPARFIAQDGEATWRTARDNEPTSFLAPAERAALLAYLFSPLPAAGA
ALWKERRDRALIAAFLGGGLKTGEARALTISCVKLGSTMLTIPAAQPEFTRETHLASFAIALFDAWLAERQRCGIPGELV
FPASQSGRPMHKATMLRAVDAIVDAADIAQSRTARASPQTLRNTFAAELFENGVEPEKVGQWLGFAQPISSNRLHRAWKN
WRESLASALPDAESLTDEISTEPSQA

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38337; Mature: 38205

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPILTSPPSPPDIPSDLFDRDTSDWLNHPDTAFDAWLAAQEFRRSSADVYRAQWGAFL
CCCCCCCCCCCCCCCCHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GWLAKRQKNLATVDTETIALFVGELPIKKTQRVRYLRLIERVLDHVRKNEFGSTNPARFI
HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEE
AQDGEATWRTARDNEPTSFLAPAERAALLAYLFSPLPAAGAALWKERRDRALIAAFLGGG
ECCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
LKTGEARALTISCVKLGSTMLTIPAAQPEFTRETHLASFAIALFDAWLAERQRCGIPGEL
CCCCCCCEEEEHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VFPASQSGRPMHKATMLRAVDAIVDAADIAQSRTARASPQTLRNTFAAELFENGVEPEKV
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH
GQWLGFAQPISSNRLHRAWKNWRESLASALPDAESLTDEISTEPSQA
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLPILTSPPSPPDIPSDLFDRDTSDWLNHPDTAFDAWLAAQEFRRSSADVYRAQWGAFL
CCCCCCCCCCCCCCCHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GWLAKRQKNLATVDTETIALFVGELPIKKTQRVRYLRLIERVLDHVRKNEFGSTNPARFI
HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEE
AQDGEATWRTARDNEPTSFLAPAERAALLAYLFSPLPAAGAALWKERRDRALIAAFLGGG
ECCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
LKTGEARALTISCVKLGSTMLTIPAAQPEFTRETHLASFAIALFDAWLAERQRCGIPGEL
CCCCCCCEEEEHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VFPASQSGRPMHKATMLRAVDAIVDAADIAQSRTARASPQTLRNTFAAELFENGVEPEKV
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH
GQWLGFAQPISSNRLHRAWKNWRESLASALPDAESLTDEISTEPSQA
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA