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The map label for this gene is nifM [H]

Identifier: 126443707

GI number: 126443707

Start: 1553181

End: 1553978

Strand: Reverse

Name: nifM [H]

Synonym: BURPS668_A1626

Alternate gene names: 126443707

Gene position: 1553978-1553181 (Counterclockwise)

Preceding gene: 126444602

Following gene: 126442354

Centisome position: 49.69

GC content: 72.18

Gene sequence:

>798_bases
ATGGATACGATCGACGAAACCCTCGAGGCGCGGCCGCACGCGCGCGTGAGCGTCAACGGCGTCGAGATCGGCGCGGCGGA
GATCGCCGACGAGCGCGCGCATCATGCCGACGCCGACGATCCGCTCGACGCCGCGCGGCGCGCGCTCGTCGTGCGCGAGC
TGCTGCGCCAGCGCGCGGTTGCGCTCGGGCTCGCGGCAGAAGGCGCGCCGCTCGGCGACGATGCGCTCGACGCGCTGCTC
GCGCGCGAGCTCACGCCTCTGCCGGAGCCTACGCGCGACGCCTGCGAGCGCTACTACCTGAACCACGCGGCGCGCTTTCG
CCGCCGCGACATCGTCTACGCGAGCCACATCCTGTTCGCGGTGACGGACGCGACACCGCTCGCGCCGCTGCGCCGCGAGG
CCGAGGCGACGCTCGCGCGCGTGCTCGCCGAGCCGCAAACATTCGAAGCGCGCGCGCGCGAGCTGTCGAACTGCCCGTCG
GCGCAGGTCGGCGGCAGTCTCGGGCAATTGCTGCGCGGCGATTCGGTACCGGAGTTCGACGCCGCCGTGTTCGACACGAC
GGATTCGGGCGTGCTGCCGCGCCTCGTGAACACGCGCTTCGGCTTTCACATCGTGCGGATCGAGCGCCGCGTGCCGGGCG
ATCCGGTGCCGTTCGACGCGGTCGCGGCCGAGATCGCCGCGTTCCTCGCCGAGCGCGTGCACCACAAGGCGATCCAGCAA
TACGTGACGATTCTCGCGAGCGGCGCGCGGATCGAAGGCGTTGCGCTCGGCGACGCGAACGGCCCGCTGGTTCAATGA

Upstream 100 bases:

>100_bases
ACGCGGATGGTGCATGTCTGGAGCGGATTCGCGTCGGTCGCCTATCTGATCCGCCCTTACCAGCTCGTTCGCAAGCGCTG
ATCGGCGGCGGACCAGGCCG

Downstream 100 bases:

>100_bases
GCTGACTTCACAAGGAGGGCGCACATGGGCTCACGGCACGGTTCCGGCGCGTTCGACCCCGCGCCCGCGATTCCCGCACG
CGCCTGGTCGGTGCTCTTCG

Product: peptidyl-prolyl cis-trans isomerase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MDTIDETLEARPHARVSVNGVEIGAAEIADERAHHADADDPLDAARRALVVRELLRQRAVALGLAAEGAPLGDDALDALL
ARELTPLPEPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRREAEATLARVLAEPQTFEARARELSNCPS
AQVGGSLGQLLRGDSVPEFDAAVFDTTDSGVLPRLVNTRFGFHIVRIERRVPGDPVPFDAVAAEIAAFLAERVHHKAIQQ
YVTILASGARIEGVALGDANGPLVQ

Sequences:

>Translated_265_residues
MDTIDETLEARPHARVSVNGVEIGAAEIADERAHHADADDPLDAARRALVVRELLRQRAVALGLAAEGAPLGDDALDALL
ARELTPLPEPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRREAEATLARVLAEPQTFEARARELSNCPS
AQVGGSLGQLLRGDSVPEFDAAVFDTTDSGVLPRLVNTRFGFHIVRIERRVPGDPVPFDAVAAEIAAFLAERVHHKAIQQ
YVTILASGARIEGVALGDANGPLVQ
>Mature_265_residues
MDTIDETLEARPHARVSVNGVEIGAAEIADERAHHADADDPLDAARRALVVRELLRQRAVALGLAAEGAPLGDDALDALL
ARELTPLPEPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRREAEATLARVLAEPQTFEARARELSNCPS
AQVGGSLGQLLRGDSVPEFDAAVFDTTDSGVLPRLVNTRFGFHIVRIERRVPGDPVPFDAVAAEIAAFLAERVHHKAIQQ
YVTILASGARIEGVALGDANGPLVQ

Specific function: Required for the activation and stabilization of the iron-component (nifH) of nitrogenase. Probable PPIase [H]

COG id: COG0760

COG function: function code O; Parvulin-like peptidyl-prolyl isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PpiC domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014282
- InterPro:   IPR000297
- InterPro:   IPR023058
- InterPro:   IPR008880 [H]

Pfam domain/function: PF00639 Rotamase [H]

EC number: NA

Molecular weight: Translated: 28637; Mature: 28637

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS50198 PPIC_PPIASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTIDETLEARPHARVSVNGVEIGAAEIADERAHHADADDPLDAARRALVVRELLRQRAV
CCCHHHHHHCCCCCEEEECCEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
ALGLAAEGAPLGDDALDALLARELTPLPEPTRDACERYYLNHAARFRRRDIVYASHILFA
HHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
VTDATPLAPLRREAEATLARVLAEPQTFEARARELSNCPSAQVGGSLGQLLRGDSVPEFD
ECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCHHHHHHHCCCCCCCCC
AAVFDTTDSGVLPRLVNTRFGFHIVRIERRVPGDPVPFDAVAAEIAAFLAERVHHKAIQQ
HHEECCCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YVTILASGARIEGVALGDANGPLVQ
HHHHHHCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MDTIDETLEARPHARVSVNGVEIGAAEIADERAHHADADDPLDAARRALVVRELLRQRAV
CCCHHHHHHCCCCCEEEECCEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
ALGLAAEGAPLGDDALDALLARELTPLPEPTRDACERYYLNHAARFRRRDIVYASHILFA
HHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
VTDATPLAPLRREAEATLARVLAEPQTFEARARELSNCPSAQVGGSLGQLLRGDSVPEFD
ECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCHHHHHHHCCCCCCCCC
AAVFDTTDSGVLPRLVNTRFGFHIVRIERRVPGDPVPFDAVAAEIAAFLAERVHHKAIQQ
HHEECCCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YVTILASGARIEGVALGDANGPLVQ
HHHHHHCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2644218 [H]