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The map label for this gene is glxA [H]

Identifier: 126443695

GI number: 126443695

Start: 827347

End: 828432

Strand: Reverse

Name: glxA [H]

Synonym: BURPS668_A0848

Alternate gene names: 126443695

Gene position: 828432-827347 (Counterclockwise)

Preceding gene: 126444264

Following gene: 126442312

Centisome position: 26.49

GC content: 66.48

Gene sequence:

>1086_bases
TTGCGACTATGCGTAAAAACCATTAGATCGACGAATCGTCAGTCTTGGCGCGGCTTCGGCCGCGAGCGCCGCCTCGTGCT
GCTTGCCTGCTTGCGCCTTGCTTGCTACGCTCGGCCGATCGTTTCGCGAGCGTGCGCGCCCATGCCAGAAGAATTTCATT
TCCTGCTGATGCCCGGCTTCTCCGCGCTCGGCTTCATGTCGGCTGTCGAGCCGCTGCGCGTCGCGAACCGCTTCAGGCCG
AACCTGTACCACTGGCGCATCGTGAGCTGCGACGGCGCGCCCGTCGTCGCGAGCAACGGCATCTCACTGAACGCGGACGC
CGCATTCGCGCAGGTCGAGCATGCGCACACGATCTTCGTGATCGCCGGCTTCGATCCGCTCGCGCGCTACACGCGCGCGC
TCGGCGACTGGCTCAGGCGCGAGTATCGGCAAGGCGCGACGGCGGGCGGCATCGATACCGGCAGCTTCGTGCTCGCGGAA
GCGGGGCTCTTCGACGCGTCGCATGCGCTGACGCTGCACTGGGAAGCGCTCGCCGCGTTCCAGGAGCGCTACCCGCACCT
GAAGACCACGCAGGAACTGTTCGAGATCGACGCGCGACGCATCACGTGCGCGGGCGGCACCGCGTCGATCGACATGATGC
TCGACCTGATCGGCCGCCGGCACGGCGCCGAACTCGCCGCGACGATCTCCGAGCAGTTCGTGCTGAGCCGGATCCGCCAA
CGCTCCGATCGCCAGCGCCTCGAGATCGCCGCGCGCTACGGCGTGCACAACCGCAAGCTGATCCAGGTGATCGGAACCAT
GGAGCACCACATCGAAAGCCCGCTGTCGTCCGACGCGCTCGCGCGGGAGGTGGGCATCACGCGCCGCCAGCTCGAGCGGC
TGTTCAGCACGATGCTCGACGATACGCCGGCACGTTTCCATTTGCGGCTGCGGCTCGAGCGCGCGCGCGAACTGCTTCAG
CAGACCGACATGACGGTCGCGGCCGTATGCGCGGCGTGCGGATTCGAATCGCCTTCGCATTTTTCCCGCACCTATCGTGC
GCAATTCGGCACAAGCCCGAGAAGCGACCGGCATACGTCGCGTTGA

Upstream 100 bases:

>100_bases
GCAGGCGATTTCGACTCAACCGCGCGGCCTGCACCGTGGGCTCAAAGGTAACGGGCCAGATTCGCGGCGAGGCGACCGAC
GGCGACCTTTTCTTGCCTGT

Downstream 100 bases:

>100_bases
GCCGCCCGCGAGATGCGCGGCCGGTGAATGCGGCAGTGCAAAATCGTGCGCTGCCTGACGGTTTCCGTCGATGGAACCGC
TCCTCGAAAATAATTCGAAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MRLCVKTIRSTNRQSWRGFGRERRLVLLACLRLACYARPIVSRACAPMPEEFHFLLMPGFSALGFMSAVEPLRVANRFRP
NLYHWRIVSCDGAPVVASNGISLNADAAFAQVEHAHTIFVIAGFDPLARYTRALGDWLRREYRQGATAGGIDTGSFVLAE
AGLFDASHALTLHWEALAAFQERYPHLKTTQELFEIDARRITCAGGTASIDMMLDLIGRRHGAELAATISEQFVLSRIRQ
RSDRQRLEIAARYGVHNRKLIQVIGTMEHHIESPLSSDALAREVGITRRQLERLFSTMLDDTPARFHLRLRLERARELLQ
QTDMTVAAVCAACGFESPSHFSRTYRAQFGTSPRSDRHTSR

Sequences:

>Translated_361_residues
MRLCVKTIRSTNRQSWRGFGRERRLVLLACLRLACYARPIVSRACAPMPEEFHFLLMPGFSALGFMSAVEPLRVANRFRP
NLYHWRIVSCDGAPVVASNGISLNADAAFAQVEHAHTIFVIAGFDPLARYTRALGDWLRREYRQGATAGGIDTGSFVLAE
AGLFDASHALTLHWEALAAFQERYPHLKTTQELFEIDARRITCAGGTASIDMMLDLIGRRHGAELAATISEQFVLSRIRQ
RSDRQRLEIAARYGVHNRKLIQVIGTMEHHIESPLSSDALAREVGITRRQLERLFSTMLDDTPARFHLRLRLERARELLQ
QTDMTVAAVCAACGFESPSHFSRTYRAQFGTSPRSDRHTSR
>Mature_361_residues
MRLCVKTIRSTNRQSWRGFGRERRLVLLACLRLACYARPIVSRACAPMPEEFHFLLMPGFSALGFMSAVEPLRVANRFRP
NLYHWRIVSCDGAPVVASNGISLNADAAFAQVEHAHTIFVIAGFDPLARYTRALGDWLRREYRQGATAGGIDTGSFVLAE
AGLFDASHALTLHWEALAAFQERYPHLKTTQELFEIDARRITCAGGTASIDMMLDLIGRRHGAELAATISEQFVLSRIRQ
RSDRQRLEIAARYGVHNRKLIQVIGTMEHHIESPLSSDALAREVGITRRQLERLFSTMLDDTPARFHLRLRLERARELLQ
QTDMTVAAVCAACGFESPSHFSRTYRAQFGTSPRSDRHTSR

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=119, Percent_Identity=31.9327731092437, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40709; Mature: 40709

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLCVKTIRSTNRQSWRGFGRERRLVLLACLRLACYARPIVSRACAPMPEEFHFLLMPGF
CHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCEEEEECCH
SALGFMSAVEPLRVANRFRPNLYHWRIVSCDGAPVVASNGISLNADAAFAQVEHAHTIFV
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCEECCCHHHHHHHCCEEEEE
IAGFDPLARYTRALGDWLRREYRQGATAGGIDTGSFVLAEAGLFDASHALTLHWEALAAF
EECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEECCCCCCCCCEEEEHHHHHHHH
QERYPHLKTTQELFEIDARRITCAGGTASIDMMLDLIGRRHGAELAATISEQFVLSRIRQ
HHHCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RSDRQRLEIAARYGVHNRKLIQVIGTMEHHIESPLSSDALAREVGITRRQLERLFSTMLD
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
DTPARFHLRLRLERARELLQQTDMTVAAVCAACGFESPSHFSRTYRAQFGTSPRSDRHTS
CCCCCEEHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCC
R
C
>Mature Secondary Structure
MRLCVKTIRSTNRQSWRGFGRERRLVLLACLRLACYARPIVSRACAPMPEEFHFLLMPGF
CHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCEEEEECCH
SALGFMSAVEPLRVANRFRPNLYHWRIVSCDGAPVVASNGISLNADAAFAQVEHAHTIFV
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCEECCCHHHHHHHCCEEEEE
IAGFDPLARYTRALGDWLRREYRQGATAGGIDTGSFVLAEAGLFDASHALTLHWEALAAF
EECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEECCCCCCCCCEEEEHHHHHHHH
QERYPHLKTTQELFEIDARRITCAGGTASIDMMLDLIGRRHGAELAATISEQFVLSRIRQ
HHHCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RSDRQRLEIAARYGVHNRKLIQVIGTMEHHIESPLSSDALAREVGITRRQLERLFSTMLD
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
DTPARFHLRLRLERARELLQQTDMTVAAVCAACGFESPSHFSRTYRAQFGTSPRSDRHTS
CCCCCEEHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]