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The map label for this gene is rbsC [H]

Identifier: 126443646

GI number: 126443646

Start: 250454

End: 251488

Strand: Reverse

Name: rbsC [H]

Synonym: BURPS668_A0285

Alternate gene names: 126443646

Gene position: 251488-250454 (Counterclockwise)

Preceding gene: 126445304

Following gene: 126443787

Centisome position: 8.04

GC content: 70.34

Gene sequence:

>1035_bases
ATGAACCAACAGATCAAGCAAAGCGAGACCGCCGCCGCGCCGCCGGGCGCGGCGCAGCCCCGCGCGCCGCGGCGCGCGGC
CGACCACCGCGCGCGGATGCAGGCGCTGATGCGCACGGCCGGCATGCTGCCCGTGCTCGTGCTTCTGTGCGTGGGCTTCG
GCTTCATGACCGACGGCTTCTTCACGCTGCAGAACCTGTCGATCGTCACGCAGCAGGCGTCGATCAACATCGTGCTCGCC
GCCGGCATGACGTTCGTGATCCTGACGGGCGGCATCGACCTGTCGGTCGGCTCGGTGCTCGCGGCCGCCGCGGTCGCGTC
GCTGCTCGCGTCGAACCTCCCCGGCTGGGGCTGGCTCGGCATTCCGGCCGCGCTCGCCGTCGGGCTCGCGTTCGGCGTCG
TCAACGGCGGGCTGATCTCGTTTCTGCGCCTGCCGCCCTTCATCGTCACGCTCGGCGCGCTGACCGCCGTGCGCGGCATC
GCGCGCCTGATGGGCAACGACACGACGATCTTCAACCCGCAACTGCCGTTCGCGTTCATCGGCAACGGCTCGATCCTCGG
CGTGCCGTGGCTCGTCGTGATCGCGCTCGCCGTCGTCGCGATCTCGTGGTTCATCCTGCGCCGCACGGTGCTCGGCATGC
GGATCTATGCGGTCGGCGGCAACCCCGAGGCCGCGCGCCTGTCGGGCATCAACGTGCGCGGCATCGAACTGTTCGTCTAC
GCGAGCTCCGGCCTGCTCGCCGGCCTCGGCGCGCTGATGTCCGCCGCGCGGCTGTATGCGGCCAACGGCCTGCAGCTCGG
CCAGTCGTACGAACTCGACGCGATCGCCGCGGTGATCCTCGGCGGCACGAGCTTCGTCGGCGGCGTCGGCTCGATCGTCG
GCACGCTGATCGGCGCGCTGATCATCGCGGTGCTGTCGAACGGGCTCGTGCTGCTCGGCGTGTCCGACATCTGGCAGTAC
ATCATCAAGGGGCTCGTGATCATCGGCGCGGTCGCGCTCGACCGCTACCGTCAGCACGGATCGGCCCGCACCTGA

Upstream 100 bases:

>100_bases
GGAGGCGATCATCGCGCTCGCCACCGGCTCCCGCACCGAAGCGTCGGCCGCGCACTGAGCGGCCGACCCCGTCCTGTCAT
TTCACCTTCGGGTTACCGCC

Downstream 100 bases:

>100_bases
GCGCATCGGCCGCCATGCGGCGCGCGCGCAGGTCCTCGCGCGCGCCCTCCATCCCGGACCATACGGAGACAACGACATGT
TGGAGATCAAGCACAAGCTC

Product: carbohydrate ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MNQQIKQSETAAAPPGAAQPRAPRRAADHRARMQALMRTAGMLPVLVLLCVGFGFMTDGFFTLQNLSIVTQQASINIVLA
AGMTFVILTGGIDLSVGSVLAAAAVASLLASNLPGWGWLGIPAALAVGLAFGVVNGGLISFLRLPPFIVTLGALTAVRGI
ARLMGNDTTIFNPQLPFAFIGNGSILGVPWLVVIALAVVAISWFILRRTVLGMRIYAVGGNPEAARLSGINVRGIELFVY
ASSGLLAGLGALMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLSNGLVLLGVSDIWQY
IIKGLVIIGAVALDRYRQHGSART

Sequences:

>Translated_344_residues
MNQQIKQSETAAAPPGAAQPRAPRRAADHRARMQALMRTAGMLPVLVLLCVGFGFMTDGFFTLQNLSIVTQQASINIVLA
AGMTFVILTGGIDLSVGSVLAAAAVASLLASNLPGWGWLGIPAALAVGLAFGVVNGGLISFLRLPPFIVTLGALTAVRGI
ARLMGNDTTIFNPQLPFAFIGNGSILGVPWLVVIALAVVAISWFILRRTVLGMRIYAVGGNPEAARLSGINVRGIELFVY
ASSGLLAGLGALMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLSNGLVLLGVSDIWQY
IIKGLVIIGAVALDRYRQHGSART
>Mature_344_residues
MNQQIKQSETAAAPPGAAQPRAPRRAADHRARMQALMRTAGMLPVLVLLCVGFGFMTDGFFTLQNLSIVTQQASINIVLA
AGMTFVILTGGIDLSVGSVLAAAAVASLLASNLPGWGWLGIPAALAVGLAFGVVNGGLISFLRLPPFIVTLGALTAVRGI
ARLMGNDTTIFNPQLPFAFIGNGSILGVPWLVVIALAVVAISWFILRRTVLGMRIYAVGGNPEAARLSGINVRGIELFVY
ASSGLLAGLGALMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGALIIAVLSNGLVLLGVSDIWQY
IIKGLVIIGAVALDRYRQHGSART

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=45.4838709677419, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1790524, Length=320, Percent_Identity=37.1875, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1788896, Length=335, Percent_Identity=34.0298507462687, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI145693152, Length=299, Percent_Identity=32.7759197324415, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=36.5269461077844, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI87082395, Length=281, Percent_Identity=37.7224199288256, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI145693214, Length=264, Percent_Identity=38.2575757575758, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1789992, Length=138, Percent_Identity=47.8260869565217, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=33.9100346020761, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787794, Length=310, Percent_Identity=30.6451612903226, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35485; Mature: 35485

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQQIKQSETAAAPPGAAQPRAPRRAADHRARMQALMRTAGMLPVLVLLCVGFGFMTDGF
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCH
FTLQNLSIVTQQASINIVLAAGMTFVILTGGIDLSVGSVLAAAAVASLLASNLPGWGWLG
HHHHHHHHEEECCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
IPAALAVGLAFGVVNGGLISFLRLPPFIVTLGALTAVRGIARLMGNDTTIFNPQLPFAFI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEE
GNGSILGVPWLVVIALAVVAISWFILRRTVLGMRIYAVGGNPEAARLSGINVRGIELFVY
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCEECCCEEEEEEEEEE
ASSGLLAGLGALMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGAL
ECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IIAVLSNGLVLLGVSDIWQYIIKGLVIIGAVALDRYRQHGSART
HHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNQQIKQSETAAAPPGAAQPRAPRRAADHRARMQALMRTAGMLPVLVLLCVGFGFMTDGF
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCH
FTLQNLSIVTQQASINIVLAAGMTFVILTGGIDLSVGSVLAAAAVASLLASNLPGWGWLG
HHHHHHHHEEECCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
IPAALAVGLAFGVVNGGLISFLRLPPFIVTLGALTAVRGIARLMGNDTTIFNPQLPFAFI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEE
GNGSILGVPWLVVIALAVVAISWFILRRTVLGMRIYAVGGNPEAARLSGINVRGIELFVY
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCEECCCEEEEEEEEEE
ASSGLLAGLGALMSAARLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIVGTLIGAL
ECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IIAVLSNGLVLLGVSDIWQYIIKGLVIIGAVALDRYRQHGSART
HHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]