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The map label for this gene is 126442961

Identifier: 126442961

GI number: 126442961

Start: 2206172

End: 2207446

Strand: Reverse

Name: 126442961

Synonym: BURPS668_A2279

Alternate gene names: NA

Gene position: 2207446-2206172 (Counterclockwise)

Preceding gene: 126443928

Following gene: 126444918

Centisome position: 70.58

GC content: 76.55

Gene sequence:

>1275_bases
ATGAACACCGAGCCGATCGAACTGGAACCCGCTACCGCCGAGCCGCCCGGCATCGACACCGCGCTGCCGCTGCCCGCGTG
CAGCGCGTTCGACGCGGCGCTCGCGCGCATCGTCTGCGACGCGCGGCTCGCCGCCTGGCTCGCGCGCTTTCCGGGGCTGT
CCGACTGGCGCGCGTCGGCGGGCGAGCGGCCGTGCTTCGAGCGCCCCGGCGTGCTCGAGCTGCGGCGCGGCGGCGCGGCC
GCGCACGTCGCGATCGATCTCGCGGCGTTTCCGGCGCTCGAGGTCGTCGCCGCGCCCGCGCTCGACGCGCGCGGCGACGC
GAGCCTCTCGCTGCGCGCGGCGCTCGCGGCGACGCTGCTCGCGCCGCTCGTCGCCGCGTTCGCGGCGGCGGGGCTCGACG
GCGTGACGGTCGGCGCGCTGCGCGCGGTGCCCGCCGCGGCGCTCGACGCGACGCGCTGCATGCTGTCGTTCGCGCTCGAC
GGCGCGCCGCTGCGCTGCGCGCTGCTCGATGCGCAAGCGCCGTGGCTCGACGCGCTCGCGGCCCGGCTGCACGACGAGCG
GCGCCGCGATGCGGCAAGCGGGCTCGCCCGCGTGCGCTTGCCGGGGCGCGTGCGGCTCGGCACGCGCGCGCTGCCGCTCG
CGGTGCTGCGCAGCCTGCGGCCGGGCGACGTGCTGCTCGACATGGTGCCCGCCGCACTGGGCGCCGCGCGGGCGGGCCCG
CTGCATGCGTGGTGGGGCGCGCGGCGCGCGGCCCAATGGCACGCAACCGTTCTGATCGAGGGAACCACGATGACGATGAC
CGAAATGCCAGACACCGCCGACGACCTCGACGAGCCGATCGTCGCGGGCGACTTGCCGGCCGATTCCTTGGCCGATTCCT
TGGCCGATTTTCCGGCCGATTCCCCGGCTGAATTTCCGGCCGACCGGGCGGGCGATCTGCCGGCCGATTCCGCGGCTCAT
TCGTCGCCCGGTTCGCTCGCCGGGTTGCCGGCCGACGCGCCGCCGCGCGACGCGCGGTACGCCGCGCCCGAGCCGGCCGA
TCTCGGCGAGGTCGCGCTGCCCGTGCACGTCGAGATCGACACGCTGTCGCTGTCGATCGCCGAGCTCGCCGCGCTGCGCC
CGGGCTACGTGCTCGAGTTGCCGCTCGCCGCGCGCGACGTGCCGGTGCGGCTCGTCGCATACGGCCAGGCGATCGGCGGC
GGCCGCCTCGTCGCGGTGGGCGCGCATCTCGGCGTGCGGATCGACCGGATGGCGGGCGACGATGGTTCAGTTTAA

Upstream 100 bases:

>100_bases
TGCACGCGCGACTCGACACGCTGCTCGCGCATCACGGCGCGCCGCGCACGATCGAGATCGACGTCGGCTGAAACGCGCGC
AATCGAACCCGACCGCGACG

Downstream 100 bases:

>100_bases
CGACATCACCGGCCTCTTGATCGCCGTGCTCGTGATGAGCATGGTGCCGTTCATCGCGATGGTGGTCACCTCGTACGCGA
AGATCGTCGTCGTGCTCGGC

Product: type III secretion system apparatus protein YscQ/HrcQ

Products: NA

Alternate protein names: HrcQ Protein; Type III Secretion Apparatus Protein SctQ; Surface Presentation Of Antigens Domain-Containing Protein; Type III Secretion Inner Membrane Protein SctQ; Flagellar Motor Switch/Type III Secretory Pathway Protein; Hrp Conserved Protein HRCQ; Type III Secretion System Apparatus Protein Hrcq

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MNTEPIELEPATAEPPGIDTALPLPACSAFDAALARIVCDARLAAWLARFPGLSDWRASAGERPCFERPGVLELRRGGAA
AHVAIDLAAFPALEVVAAPALDARGDASLSLRAALAATLLAPLVAAFAAAGLDGVTVGALRAVPAAALDATRCMLSFALD
GAPLRCALLDAQAPWLDALAARLHDERRRDAASGLARVRLPGRVRLGTRALPLAVLRSLRPGDVLLDMVPAALGAARAGP
LHAWWGARRAAQWHATVLIEGTTMTMTEMPDTADDLDEPIVAGDLPADSLADSLADFPADSPAEFPADRAGDLPADSAAH
SSPGSLAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGG
GRLVAVGAHLGVRIDRMAGDDGSV

Sequences:

>Translated_424_residues
MNTEPIELEPATAEPPGIDTALPLPACSAFDAALARIVCDARLAAWLARFPGLSDWRASAGERPCFERPGVLELRRGGAA
AHVAIDLAAFPALEVVAAPALDARGDASLSLRAALAATLLAPLVAAFAAAGLDGVTVGALRAVPAAALDATRCMLSFALD
GAPLRCALLDAQAPWLDALAARLHDERRRDAASGLARVRLPGRVRLGTRALPLAVLRSLRPGDVLLDMVPAALGAARAGP
LHAWWGARRAAQWHATVLIEGTTMTMTEMPDTADDLDEPIVAGDLPADSLADSLADFPADSPAEFPADRAGDLPADSAAH
SSPGSLAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGG
GRLVAVGAHLGVRIDRMAGDDGSV
>Mature_424_residues
MNTEPIELEPATAEPPGIDTALPLPACSAFDAALARIVCDARLAAWLARFPGLSDWRASAGERPCFERPGVLELRRGGAA
AHVAIDLAAFPALEVVAAPALDARGDASLSLRAALAATLLAPLVAAFAAAGLDGVTVGALRAVPAAALDATRCMLSFALD
GAPLRCALLDAQAPWLDALAARLHDERRRDAASGLARVRLPGRVRLGTRALPLAVLRSLRPGDVLLDMVPAALGAARAGP
LHAWWGARRAAQWHATVLIEGTTMTMTEMPDTADDLDEPIVAGDLPADSLADSLADFPADSPAEFPADRAGDLPADSAAH
SSPGSLAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGG
GRLVAVGAHLGVRIDRMAGDDGSV

Specific function: Unknown

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43594; Mature: 43594

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEPIELEPATAEPPGIDTALPLPACSAFDAALARIVCDARLAAWLARFPGLSDWRASA
CCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC
GERPCFERPGVLELRRGGAAAHVAIDLAAFPALEVVAAPALDARGDASLSLRAALAATLL
CCCCCCCCCCCEEEECCCCEEEEEEEHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
APLVAAFAAAGLDGVTVGALRAVPAAALDATRCMLSFALDGAPLRCALLDAQAPWLDALA
HHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
ARLHDERRRDAASGLARVRLPGRVRLGTRALPLAVLRSLRPGDVLLDMVPAALGAARAGP
HHHHHHHHHHHHCCCEEEECCCCEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
LHAWWGARRAAQWHATVLIEGTTMTMTEMPDTADDLDEPIVAGDLPADSLADSLADFPAD
CHHHHHHHHCCCEEEEEEEECCEEEEECCCCCHHHHCCCCEECCCCHHHHHHHHHHCCCC
SPAEFPADRAGDLPADSAAHSSPGSLAGLPADAPPRDARYAAPEPADLGEVALPVHVEID
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
TLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGD
EHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCCCEEEEEECCC
DGSV
CCCC
>Mature Secondary Structure
MNTEPIELEPATAEPPGIDTALPLPACSAFDAALARIVCDARLAAWLARFPGLSDWRASA
CCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC
GERPCFERPGVLELRRGGAAAHVAIDLAAFPALEVVAAPALDARGDASLSLRAALAATLL
CCCCCCCCCCCEEEECCCCEEEEEEEHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
APLVAAFAAAGLDGVTVGALRAVPAAALDATRCMLSFALDGAPLRCALLDAQAPWLDALA
HHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
ARLHDERRRDAASGLARVRLPGRVRLGTRALPLAVLRSLRPGDVLLDMVPAALGAARAGP
HHHHHHHHHHHHCCCEEEECCCCEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
LHAWWGARRAAQWHATVLIEGTTMTMTEMPDTADDLDEPIVAGDLPADSLADSLADFPAD
CHHHHHHHHCCCEEEEEEEECCEEEEECCCCCHHHHCCCCEECCCCHHHHHHHHHHCCCC
SPAEFPADRAGDLPADSAAHSSPGSLAGLPADAPPRDARYAAPEPADLGEVALPVHVEID
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
TLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGD
EHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCCCEEEEEECCC
DGSV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA