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The map label for this gene is yodB [H]

Identifier: 126442955

GI number: 126442955

Start: 2424337

End: 2424873

Strand: Reverse

Name: yodB [H]

Synonym: BURPS668_A2509

Alternate gene names: 126442955

Gene position: 2424873-2424337 (Counterclockwise)

Preceding gene: 126444571

Following gene: 126443743

Centisome position: 77.53

GC content: 65.92

Gene sequence:

>537_bases
ATGAATCGTATCCTCGCCGGGCAGGAGCGCTACAACCGTCCCGCCGTCTTCTTCCATTGGGCGATCTTCCTGCTCGTCGC
GCTCGCGTATCTCGCGATCGAAGTGCGTGGCCCGAAAGGGACCGACAGCCGGGTGTTCTGGTCGAATGTCCATTACCTTG
CCGGCTCGCTGGTGCTCGCGCTGGCGGTGCTGCGGATCGTCTGGCGCTTCGCGGGCGGCGCGCCGCGCGAGCTGCCGCAG
CCGGCGTGGCTCGCGCTGTTCGCGAAGCTCGCGCATCTCGCGCTGTACGCATTCATCGTCGCGCAGCCGCTGCTCGGCAT
CATGACGCTGAACTTCGGCGGCAAGCCGGTGACGCTCGCGGGAATCGACTGGTCGTTCACGCTGTTCGCGCCGAATGCGG
CGCTGCGCTCGACGGTCAAGGAAGCGCACGAATTGATCGGCAACGTGTTCTATTACGTGATCGGGCTGCACGCGCTCGCC
GCGCTCTGGCATCACTTCGTGAAGCGGGACGCGACGCTGCGCCGGATGACGTTCTGA

Upstream 100 bases:

>100_bases
GCCACGGGGCCCGCCCATCGCGCGTCATTACAATTCGATAACGTCGCGTGCGGCACCGCGCGCGATACGGTGGTTCCCTT
CAATACGAACGAGACTGATC

Downstream 100 bases:

>100_bases
CGCGCCCGGCGGCCGCGGCGCGCATCGTTGCGAATGCAACGATGCGCGTGCGCGGGCCGTGCGCGCACCGCCGGCCCCGC
GACCGTTTCACGCTACCCAA

Product: putative [Ni] hydrogenase, b-type cytochrome subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNRILAGQERYNRPAVFFHWAIFLLVALAYLAIEVRGPKGTDSRVFWSNVHYLAGSLVLALAVLRIVWRFAGGAPRELPQ
PAWLALFAKLAHLALYAFIVAQPLLGIMTLNFGGKPVTLAGIDWSFTLFAPNAALRSTVKEAHELIGNVFYYVIGLHALA
ALWHHFVKRDATLRRMTF

Sequences:

>Translated_178_residues
MNRILAGQERYNRPAVFFHWAIFLLVALAYLAIEVRGPKGTDSRVFWSNVHYLAGSLVLALAVLRIVWRFAGGAPRELPQ
PAWLALFAKLAHLALYAFIVAQPLLGIMTLNFGGKPVTLAGIDWSFTLFAPNAALRSTVKEAHELIGNVFYYVIGLHALA
ALWHHFVKRDATLRRMTF
>Mature_178_residues
MNRILAGQERYNRPAVFFHWAIFLLVALAYLAIEVRGPKGTDSRVFWSNVHYLAGSLVLALAVLRIVWRFAGGAPRELPQ
PAWLALFAKLAHLALYAFIVAQPLLGIMTLNFGGKPVTLAGIDWSFTLFAPNAALRSTVKEAHELIGNVFYYVIGLHALA
ALWHHFVKRDATLRRMTF

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=171, Percent_Identity=35.672514619883, Blast_Score=110, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 19942; Mature: 19942

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRILAGQERYNRPAVFFHWAIFLLVALAYLAIEVRGPKGTDSRVFWSNVHYLAGSLVLA
CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
LAVLRIVWRFAGGAPRELPQPAWLALFAKLAHLALYAFIVAQPLLGIMTLNFGGKPVTLA
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
GIDWSFTLFAPNAALRSTVKEAHELIGNVFYYVIGLHALAALWHHFVKRDATLRRMTF
ECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC
>Mature Secondary Structure
MNRILAGQERYNRPAVFFHWAIFLLVALAYLAIEVRGPKGTDSRVFWSNVHYLAGSLVLA
CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
LAVLRIVWRFAGGAPRELPQPAWLALFAKLAHLALYAFIVAQPLLGIMTLNFGGKPVTLA
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
GIDWSFTLFAPNAALRSTVKEAHELIGNVFYYVIGLHALAALWHHFVKRDATLRRMTF
ECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]