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The map label for this gene is invF [H]

Identifier: 126442348

GI number: 126442348

Start: 2114263

End: 2114928

Strand: Reverse

Name: invF [H]

Synonym: BURPS668_A2176

Alternate gene names: 126442348

Gene position: 2114928-2114263 (Counterclockwise)

Preceding gene: 126445145

Following gene: 126442335

Centisome position: 67.62

GC content: 66.22

Gene sequence:

>666_bases
GTGACGGAAATCGCGAAACTGGACGTGTCGTTCGGCACGATGTCCCATGCCGTTTCGATCGACAAGAATAAATCGGCGCT
GGTTATCGGCATCGGTCAATTCAAAATCGCGTCGCGTGAAGGCGCATGGCGTTTTCATGACGTGCCGTTATTCGAGGCGG
CGAAATTGCTCGCTTTTCTGGAAAGCTGCGGCGCGCCGGACGGCGCCGGCCGCGAATATCGCGCGGGGGCGCCGGACGGC
GCGGTGATCGACGCGCCCGGCGATCTGAGCATCTGGAAATTCGACCGGTGGCTGATCGCCCGCGTGATGGGCGCGCCGCA
CGGCGCCGATCCGCTGTTCGCGTTCCTGCGCGCGCAGGAGAGCTACGGGCTCGTGCGCTTCTTGCTGCGCGAGCGTGCGA
ACCCGCAGCCGATCGCCGCGCTTGCCGCGCGCTACGGCGTGTCGGAGCCGCACTTTCGCCGGCTGTGCCGGCAGGCGCTC
GGCCGCGGCCTGAAGCGCGAGCTTCGGCAATGGCGCGCCGCGCAGGCGGTGCTCGAGGTGGTCGAGAGCCGCGACAGCAT
GACCGAGGTCGCGATGAGCAACGGCTTCGCGTCTTCGTCTCACTTCTCGCGGGAAATCAAGGACTTGTTCGGCATTTCGC
CGTGCCGGTTCCGTCGCCGGACATGA

Upstream 100 bases:

>100_bases
GTGCGCGATGGCGAATCGGTTCAATAAGTTCGATTGCGTGGTGGTTTCACCCGGAAAATCCAGGTCGTTTGCGGGGCCGG
CAATCCGGCTGATCAGGCCG

Downstream 100 bases:

>100_bases
GGAGCCCCAACCGATGATGTATGCCGACACGGCCAGACGATACGCAGCCGCGCTTGCCGCGTCGCTGCTGATGACGGGCG
CGGCGTTCGCCGCGCCGACC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional regulator invF [H]

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTEIAKLDVSFGTMSHAVSIDKNKSALVIGIGQFKIASREGAWRFHDVPLFEAAKLLAFLESCGAPDGAGREYRAGAPDG
AVIDAPGDLSIWKFDRWLIARVMGAPHGADPLFAFLRAQESYGLVRFLLRERANPQPIAALAARYGVSEPHFRRLCRQAL
GRGLKRELRQWRAAQAVLEVVESRDSMTEVAMSNGFASSSHFSREIKDLFGISPCRFRRRT

Sequences:

>Translated_221_residues
MTEIAKLDVSFGTMSHAVSIDKNKSALVIGIGQFKIASREGAWRFHDVPLFEAAKLLAFLESCGAPDGAGREYRAGAPDG
AVIDAPGDLSIWKFDRWLIARVMGAPHGADPLFAFLRAQESYGLVRFLLRERANPQPIAALAARYGVSEPHFRRLCRQAL
GRGLKRELRQWRAAQAVLEVVESRDSMTEVAMSNGFASSSHFSREIKDLFGISPCRFRRRT
>Mature_220_residues
TEIAKLDVSFGTMSHAVSIDKNKSALVIGIGQFKIASREGAWRFHDVPLFEAAKLLAFLESCGAPDGAGREYRAGAPDGA
VIDAPGDLSIWKFDRWLIARVMGAPHGADPLFAFLRAQESYGLVRFLLRERANPQPIAALAARYGVSEPHFRRLCRQALG
RGLKRELRQWRAAQAVLEVVESRDSMTEVAMSNGFASSSHFSREIKDLFGISPCRFRRRT

Specific function: Transcriptional regulator required for the expression of several genes encoding type III secretion system SPI1 effector proteins. The interaction with sicA is necessary for the activation of sigDE (sopB pipC), sicAsipBCDA, and sopE [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24506; Mature: 24375

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEIAKLDVSFGTMSHAVSIDKNKSALVIGIGQFKIASREGAWRFHDVPLFEAAKLLAFL
CCCHHEEECCCCHHHHEEEECCCCCEEEEEECCEEEECCCCCEEECCCCHHHHHHHHHHH
ESCGAPDGAGREYRAGAPDGAVIDAPGDLSIWKFDRWLIARVMGAPHGADPLFAFLRAQE
HHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SYGLVRFLLRERANPQPIAALAARYGVSEPHFRRLCRQALGRGLKRELRQWRAAQAVLEV
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VESRDSMTEVAMSNGFASSSHFSREIKDLFGISPCRFRRRT
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHCCCC
>Mature Secondary Structure 
TEIAKLDVSFGTMSHAVSIDKNKSALVIGIGQFKIASREGAWRFHDVPLFEAAKLLAFL
CCHHEEECCCCHHHHEEEECCCCCEEEEEECCEEEECCCCCEEECCCCHHHHHHHHHHH
ESCGAPDGAGREYRAGAPDGAVIDAPGDLSIWKFDRWLIARVMGAPHGADPLFAFLRAQE
HHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SYGLVRFLLRERANPQPIAALAARYGVSEPHFRRLCRQALGRGLKRELRQWRAAQAVLEV
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VESRDSMTEVAMSNGFASSSHFSREIKDLFGISPCRFRRRT
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]