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The map label for this gene is 126209404

Identifier: 126209404

GI number: 126209404

Start: 2177333

End: 2177761

Strand: Reverse

Name: 126209404

Synonym: APL_1946

Alternate gene names: NA

Gene position: 2177761-2177333 (Counterclockwise)

Preceding gene: 126209407

Following gene: 126209403

Centisome position: 95.75

GC content: 45.22

Gene sequence:

>429_bases
ATGTCAAATGAATGGCTCTATTGGGCATTGATTTCCGCCTTATTTGCCGCCTTTACCGCAATCTTTGCCAAAGTCGGTTT
ACAAGGTATCGATTCGGATTTTGCGACCTTTATCCGTACTATCGTCATTATTAGCGCACTCATCGCCTTCCTCACTTACA
GTAACAAATGGCAACCGCTCGGCTCGCTTACCGGCAAAAACTGGACGTTTTTAATTCTTTCGGGAATTGCAACCGGCGTT
TCATGGTTAGCTTATTTTAAAGCGTTACAAATGGGTAATGCGTCGCAAGTTGCACCGATTGATAAATTCAGTATCGTGCT
GGTTACACTGTTTGCGGTCATCTTTTTAGGCGAAAGACCAAGCGGTCAAGATTGGATTGGAATTGCGCTGGTGGCGGCGG
GTGTTTTAACCCTTGCGATAAAGCGGTAA

Upstream 100 bases:

>100_bases
TTTTTTTAACCGAATACAAAAGCAAAATCCGCTATAATTTAGCAGTTTTTAGACCTATATCCAGTCTGCTTGTCTCTTTT
ATAACCATTTCGGAGTAATT

Downstream 100 bases:

>100_bases
AATAATGCCGATTTTTTACAAAATTCCGATTAAATTTAACCGCTTGCAACACACGATTTATGCCTAACTCATTCCCGATT
ATCGAAGTGGTGTTTGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: ORF6 [H]

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSNEWLYWALISALFAAFTAIFAKVGLQGIDSDFATFIRTIVIISALIAFLTYSNKWQPLGSLTGKNWTFLILSGIATGV
SWLAYFKALQMGNASQVAPIDKFSIVLVTLFAVIFLGERPSGQDWIGIALVAAGVLTLAIKR

Sequences:

>Translated_142_residues
MSNEWLYWALISALFAAFTAIFAKVGLQGIDSDFATFIRTIVIISALIAFLTYSNKWQPLGSLTGKNWTFLILSGIATGV
SWLAYFKALQMGNASQVAPIDKFSIVLVTLFAVIFLGERPSGQDWIGIALVAAGVLTLAIKR
>Mature_141_residues
SNEWLYWALISALFAAFTAIFAKVGLQGIDSDFATFIRTIVIISALIAFLTYSNKWQPLGSLTGKNWTFLILSGIATGVS
WLAYFKALQMGNASQVAPIDKFSIVLVTLFAVIFLGERPSGQDWIGIALVAAGVLTLAIKR

Specific function: Unknown

COG id: COG2510

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 15436; Mature: 15305

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNEWLYWALISALFAAFTAIFAKVGLQGIDSDFATFIRTIVIISALIAFLTYSNKWQPL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GSLTGKNWTFLILSGIATGVSWLAYFKALQMGNASQVAPIDKFSIVLVTLFAVIFLGERP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
SGQDWIGIALVAAGVLTLAIKR
CCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNEWLYWALISALFAAFTAIFAKVGLQGIDSDFATFIRTIVIISALIAFLTYSNKWQPL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GSLTGKNWTFLILSGIATGVSWLAYFKALQMGNASQVAPIDKFSIVLVTLFAVIFLGERP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
SGQDWIGIALVAAGVLTLAIKR
CCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1655697 [H]