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The map label for this gene is xylF [H]

Identifier: 126209369

GI number: 126209369

Start: 2141946

End: 2142944

Strand: Direct

Name: xylF [H]

Synonym: APL_1909

Alternate gene names: 126209369

Gene position: 2141946-2142944 (Clockwise)

Preceding gene: 126209363

Following gene: 126209370

Centisome position: 94.17

GC content: 39.64

Gene sequence:

>999_bases
ATGAAAATGAAAAGTCTGATTTTATCTATCGCTGCGGCATTAACCGTAATGTCAGGTTCAGCGTTAGCTAAAGATTTAAC
CATCGGTATGTCCATTGATGATTTACGTTTAGAGAGATGGCAAAAAGACCGTGATATTTTTGTGAAAAAAGCAGAGGCTT
TAGGGGCGAAAGTATTAGTTCAATCAGCAAATGGCGATGATGCGGCACAAGTTTCACAAATTGAAAATATGTTGAATAAA
AACGTAGACGTATTAGTGATTATTCCGCATAACGGCGATGTATTAAGTAACGTAATTTCCGAAGCAAAAAAAGAAGGTGT
GAAAGTTTTAGCTTACGACCGTTTAATCAACAATGCGGATTTGGATTTCTACGTATCGTTTGATAATGAAAAAGTCGGTG
AGTTACAAGCGCAAAGTATCGTTGAGAAAAAACCGGAAGGTAATTATTTCTTAATGGGCGGTTCGCCGGTGGATAACAAT
GCGAAACTATTCCGTAAAGGTCAAATGAAAGTATTACAACCGCATATTGATAGCGGCAAAATCAAAGTGGTGGGCGACCA
ATGGGTTGATTCTTGGTTAGCTGAAAAAGCATTGCAAATTATGGAAAACGCCTTAACCGCGAATAAAAACAATATTGATG
CGGTTGTCGCTTCAAACGATGCGACCGCAGGCGGTGCAATTCAAGCGTTAAGCGCACAAGGTTTAGCGGGTAAAGTGGCG
ATTTCCGGTCAAGATGCGGACATTGCTGCGATTAAACGTATCGTAGAAGGTACGCAAACCATGACGGTATATAAACCGAT
TACCAATTTAGCGGACAAAGCCGCTTCGATTGCGGTTAGCTTAGGTAAAGGCGAAACTTTAGAATCTAACGCAAAGTTGA
ACAACGGCGTAAAAGAAGTTGATGCTTACTTATTAGATCCGATTATTGTAACCAAAGACAATATTGACAGTACCGTGATT
AAAGATGGATTCCACACGAAAGAAGCGGTTTATAAATAA

Upstream 100 bases:

>100_bases
TATTTTGTAATTGCCGTGACAAATTATCCACCGCAAACTATCGCCAGAGCAATCGTACTTATGCTCAAACTTTGTTAAAC
CAACCCTATGAGGTGTCATT

Downstream 100 bases:

>100_bases
TCTATCTTAATCTTTAAAGTGCGGTTTATCACGACCGCACTTTATCTAACGGAGGTTTTCATTATGGCTCAATTGTTAGA
AATGAAAAATATTACTAAGA

Product: D-xylose transporter subunit XylF

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MKMKSLILSIAAALTVMSGSALAKDLTIGMSIDDLRLERWQKDRDIFVKKAEALGAKVLVQSANGDDAAQVSQIENMLNK
NVDVLVIIPHNGDVLSNVISEAKKEGVKVLAYDRLINNADLDFYVSFDNEKVGELQAQSIVEKKPEGNYFLMGGSPVDNN
AKLFRKGQMKVLQPHIDSGKIKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVASNDATAGGAIQALSAQGLAGKVA
ISGQDADIAAIKRIVEGTQTMTVYKPITNLADKAASIAVSLGKGETLESNAKLNNGVKEVDAYLLDPIIVTKDNIDSTVI
KDGFHTKEAVYK

Sequences:

>Translated_332_residues
MKMKSLILSIAAALTVMSGSALAKDLTIGMSIDDLRLERWQKDRDIFVKKAEALGAKVLVQSANGDDAAQVSQIENMLNK
NVDVLVIIPHNGDVLSNVISEAKKEGVKVLAYDRLINNADLDFYVSFDNEKVGELQAQSIVEKKPEGNYFLMGGSPVDNN
AKLFRKGQMKVLQPHIDSGKIKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVASNDATAGGAIQALSAQGLAGKVA
ISGQDADIAAIKRIVEGTQTMTVYKPITNLADKAASIAVSLGKGETLESNAKLNNGVKEVDAYLLDPIIVTKDNIDSTVI
KDGFHTKEAVYK
>Mature_332_residues
MKMKSLILSIAAALTVMSGSALAKDLTIGMSIDDLRLERWQKDRDIFVKKAEALGAKVLVQSANGDDAAQVSQIENMLNK
NVDVLVIIPHNGDVLSNVISEAKKEGVKVLAYDRLINNADLDFYVSFDNEKVGELQAQSIVEKKPEGNYFLMGGSPVDNN
AKLFRKGQMKVLQPHIDSGKIKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVASNDATAGGAIQALSAQGLAGKVA
ISGQDADIAAIKRIVEGTQTMTVYKPITNLADKAASIAVSLGKGETLESNAKLNNGVKEVDAYLLDPIIVTKDNIDSTVI
KDGFHTKEAVYK

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=325, Percent_Identity=73.2307692307692, Blast_Score=481, Evalue=1e-137,
Organism=Escherichia coli, GI1790192, Length=289, Percent_Identity=25.2595155709343, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790526, Length=225, Percent_Identity=28, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35666; Mature: 35666

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMKSLILSIAAALTVMSGSALAKDLTIGMSIDDLRLERWQKDRDIFVKKAEALGAKVLV
CCHHHHHHHHHHHHHHHCCCHHHHHEEECCCHHHHHHHHHCCCHHHHHHHHHHCCEEEEE
QSANGDDAAQVSQIENMLNKNVDVLVIIPHNGDVLSNVISEAKKEGVKVLAYDRLINNAD
ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEHHHCCCC
LDFYVSFDNEKVGELQAQSIVEKKPEGNYFLMGGSPVDNNAKLFRKGQMKVLQPHIDSGK
EEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHCCCCCEEECCCCCCCC
IKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVASNDATAGGAIQALSAQGLAGKVA
EEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCCEEEE
ISGQDADIAAIKRIVEGTQTMTVYKPITNLADKAASIAVSLGKGETLESNAKLNNGVKEV
ECCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHEEEEECCCCCCCCCCCHHCCCHHHH
DAYLLDPIIVTKDNIDSTVIKDGFHTKEAVYK
HHHHHCCEEEECCCCCCHHHCCCCCCHHHHCC
>Mature Secondary Structure
MKMKSLILSIAAALTVMSGSALAKDLTIGMSIDDLRLERWQKDRDIFVKKAEALGAKVLV
CCHHHHHHHHHHHHHHHCCCHHHHHEEECCCHHHHHHHHHCCCHHHHHHHHHHCCEEEEE
QSANGDDAAQVSQIENMLNKNVDVLVIIPHNGDVLSNVISEAKKEGVKVLAYDRLINNAD
ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEHHHCCCC
LDFYVSFDNEKVGELQAQSIVEKKPEGNYFLMGGSPVDNNAKLFRKGQMKVLQPHIDSGK
EEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHCCCCCEEECCCCCCCC
IKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVASNDATAGGAIQALSAQGLAGKVA
EEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCCEEEE
ISGQDADIAAIKRIVEGTQTMTVYKPITNLADKAASIAVSLGKGETLESNAKLNNGVKEV
ECCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHEEEEECCCCCCCCCCCHHCCCHHHH
DAYLLDPIIVTKDNIDSTVIKDGFHTKEAVYK
HHHHHCCEEEECCCCCCHHHCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]