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The map label for this gene is rpe [H]

Identifier: 126209282

GI number: 126209282

Start: 2042459

End: 2043133

Strand: Reverse

Name: rpe [H]

Synonym: APL_1820

Alternate gene names: 126209282

Gene position: 2043133-2042459 (Counterclockwise)

Preceding gene: 126209285

Following gene: 126209281

Centisome position: 89.83

GC content: 46.81

Gene sequence:

>675_bases
ATGGCTCGACAACCGTTTCTAATCGCCCCGTCCATTCTGTCTGCGGACTTGGCTCGCTTGGGAGAAGACGTTGCAGAAGT
ATTAAAAGCAGGCGGCGATATTATTCATTTTGATGTGATGGATAATCATTTCGTGCCGAATCTGACTTTTGGACCCGCTA
TCTGCAAAGCACTGCGTGATTACGGTATTACTGCGGAAATCGACGTACATTTAATGGTAAAACCGGTCGAACGTTTAATT
CCAGATTTTGCCAAAGCCGGCGCAAACTATATTACCTTCCATCCGGAAGCGACCGATCATATTGATCGTACTTTGCAAAT
GATCCGCGATCACGGCTGTAAATCCGGTTTGGTTTTCAACCCGGCAACACCGCTCAGTTATCTGGATTACGTGATGGATA
AAGTGGATATGATTTTGCTGATGGGGGTAAATCCCGGCTTCGGCGGGCAAAAATTTATTCCGGCGACTTTAGAAAAACTG
CAAGAAGCACGTCGTCGTATTGATAAAAGCGGTTATCCGATTCGTCTAGAAATCGACGGCGGCGTAAAAATCGACAACAT
TGCCGAGATTGCCGCCGCAGGTGCGGATACCTTTGTCGCCGGCTCTGCAATTTTCGATCAACCGAACTATAAAGCGGTGA
TTGATCAAATGCGTCGGGAATTAGCGCAGGTATAA

Upstream 100 bases:

>100_bases
CATTTCAAAATGAAATTTTGCGATCTGGATCGCCTTTTCTTCTCTTATTTTATGGTAGTCTATATCAATAAAATTCCAGT
TCTATTTATGAGGAAGCATT

Downstream 100 bases:

>100_bases
TAAAATCGGTTATTTTCGCAAAAAATTAGTGAAAATTAACCGCTTTTAGCCGATAAATTCCCGAGCGAATAACAATCAGC
TATGGATAAACCCTATACAT

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MARQPFLIAPSILSADLARLGEDVAEVLKAGGDIIHFDVMDNHFVPNLTFGPAICKALRDYGITAEIDVHLMVKPVERLI
PDFAKAGANYITFHPEATDHIDRTLQMIRDHGCKSGLVFNPATPLSYLDYVMDKVDMILLMGVNPGFGGQKFIPATLEKL
QEARRRIDKSGYPIRLEIDGGVKIDNIAEIAAAGADTFVAGSAIFDQPNYKAVIDQMRRELAQV

Sequences:

>Translated_224_residues
MARQPFLIAPSILSADLARLGEDVAEVLKAGGDIIHFDVMDNHFVPNLTFGPAICKALRDYGITAEIDVHLMVKPVERLI
PDFAKAGANYITFHPEATDHIDRTLQMIRDHGCKSGLVFNPATPLSYLDYVMDKVDMILLMGVNPGFGGQKFIPATLEKL
QEARRRIDKSGYPIRLEIDGGVKIDNIAEIAAAGADTFVAGSAIFDQPNYKAVIDQMRRELAQV
>Mature_223_residues
ARQPFLIAPSILSADLARLGEDVAEVLKAGGDIIHFDVMDNHFVPNLTFGPAICKALRDYGITAEIDVHLMVKPVERLIP
DFAKAGANYITFHPEATDHIDRTLQMIRDHGCKSGLVFNPATPLSYLDYVMDKVDMILLMGVNPGFGGQKFIPATLEKLQ
EARRRIDKSGYPIRLEIDGGVKIDNIAEIAAAGADTFVAGSAIFDQPNYKAVIDQMRRELAQV

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=217, Percent_Identity=40.5529953917051, Blast_Score=164, Evalue=5e-41,
Organism=Homo sapiens, GI219879828, Length=213, Percent_Identity=40.3755868544601, Blast_Score=156, Evalue=2e-38,
Organism=Homo sapiens, GI24307923, Length=168, Percent_Identity=35.1190476190476, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI1789788, Length=221, Percent_Identity=75.5656108597285, Blast_Score=362, Evalue=1e-101,
Organism=Escherichia coli, GI1790523, Length=214, Percent_Identity=38.3177570093458, Blast_Score=150, Evalue=7e-38,
Organism=Escherichia coli, GI1790754, Length=211, Percent_Identity=30.3317535545024, Blast_Score=102, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17552948, Length=224, Percent_Identity=39.7321428571429, Blast_Score=155, Evalue=1e-38,
Organism=Saccharomyces cerevisiae, GI6322341, Length=230, Percent_Identity=37.3913043478261, Blast_Score=155, Evalue=7e-39,
Organism=Drosophila melanogaster, GI24586301, Length=212, Percent_Identity=38.6792452830189, Blast_Score=149, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24622; Mature: 24491

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARQPFLIAPSILSADLARLGEDVAEVLKAGGDIIHFDVMDNHFVPNLTFGPAICKALRD
CCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH
YGITAEIDVHLMVKPVERLIPDFAKAGANYITFHPEATDHIDRTLQMIRDHGCKSGLVFN
CCCEEEEEEEEEEHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEC
PATPLSYLDYVMDKVDMILLMGVNPGFGGQKFIPATLEKLQEARRRIDKSGYPIRLEIDG
CCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
GVKIDNIAEIAAAGADTFVAGSAIFDQPNYKAVIDQMRRELAQV
CCEEHHHHHHHHCCCCHHEECCHHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARQPFLIAPSILSADLARLGEDVAEVLKAGGDIIHFDVMDNHFVPNLTFGPAICKALRD
CCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH
YGITAEIDVHLMVKPVERLIPDFAKAGANYITFHPEATDHIDRTLQMIRDHGCKSGLVFN
CCCEEEEEEEEEEHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEC
PATPLSYLDYVMDKVDMILLMGVNPGFGGQKFIPATLEKLQEARRRIDKSGYPIRLEIDG
CCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
GVKIDNIAEIAAAGADTFVAGSAIFDQPNYKAVIDQMRRELAQV
CCEEHHHHHHHHCCCCHHEECCHHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]