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The map label for this gene is yvrC [H]

Identifier: 126209259

GI number: 126209259

Start: 2017573

End: 2018679

Strand: Direct

Name: yvrC [H]

Synonym: APL_1795

Alternate gene names: 126209259

Gene position: 2017573-2018679 (Clockwise)

Preceding gene: 126209258

Following gene: 126209260

Centisome position: 88.7

GC content: 44.44

Gene sequence:

>1107_bases
ATGAAAAAGCAGTATTTTAAACGGCTTATTGCCAGTACGTTATTGTTTGCCGGCATCTCAGCGCAAGCAGAAGTAAAAGT
GTTACAAGACGTATTGGATCGTCAAGTGAAAGTTGATGTACCGGCGAAACGTGTGGTACTGGGCTTCTATTATCCGGACT
ATATTGCCGCAACCGGTTCGGAGAATTTTAAACATGTCGTCGGTATTTCACGTGAGTTTTGGGAAAAATTTAACCCCGGT
AGCTGGGCTTTATTTAGTAAAGCGTTACCCAATTTAGCGGAAATGGCGGATATCGGTAACATCAATGCCGGTACCTTCTC
GTTGGAAAAAACCTTAGCATTAAAACCGGACGTATTAGTGTTAGCCGATTGGCAATATCAAACGATTGCCGCCGATATTC
CTCGTATCGAGCAAGCCGGTATTCCGATTGTCGTGGTGGACTTCAATGCGCAAACCGTAGCGAAACATACGAAAAGTATC
CAACTTTTCGGGCAACTAGCCGGTACGGAAACACGTGCAAATCAGATCGCAAGCGAATATGAACAAGGTATCAAAGAGAT
TCAAAAACGTGTAGCGGCAAGCGGTCAAAAACCACCAAAAATTTACGTGGAATTCGGCAACAAAGGTCCGGCGGAATATA
GCTTCACTTTCGGTAAAAATATGTGGGGAGCGATTGCGAATACGGTTGGTGGCGACAATATTGCTGCGCCGTTTATTGAA
AACTGGGGGCCGATTAATCCGGAGCAATTCTTAGCGTCTAATCCGGAGGTGGTGATTATTTCCGGTACGGAAATGGGCAC
CGATAAAAATGCCGAAATTATGGCGATGGGGATTAATATCAGCGAAGCGGATGCGCAAAAACGACTGGTTGGTTTTACTC
AGCGTGCCGGTTGGTCGAACGTACCGGCGGTGAAAAAAGGCAATGTGTATGGGATTTATCACACCGCATCTCGTTCGATT
ACTGACTTAGCCAGTGCGCAATTTATGGCGAAAACGCTTTATCCGGAACAGTTTAAAGATATTGATCCGGAGAAAACTTA
TTTGGATTTCCACTGCCAATATTTGCCGGTTGTACCGCAAGGCACATTTTTTATTAAGTTAAAATAA

Upstream 100 bases:

>100_bases
TAGAAAATGCGACTAAAGAAATAGAGAAAATCGAAAAGCGTACCACAGAGAATAAAGGACGCTTGTTTGAATATCTCGAT
CAAGTGAAATAAGGATTACG

Downstream 100 bases:

>100_bases
CTATTCAATTTAATGGCAAGCGGGCTTTGGCTCACTTACCTTTTTTGAGCCGATTATGTCACATTCGATAGCCATTACTA
CCTGCCAAACTTACCCCAAT

Product: putative periplasmic iron/siderophore binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MKKQYFKRLIASTLLFAGISAQAEVKVLQDVLDRQVKVDVPAKRVVLGFYYPDYIAATGSENFKHVVGISREFWEKFNPG
SWALFSKALPNLAEMADIGNINAGTFSLEKTLALKPDVLVLADWQYQTIAADIPRIEQAGIPIVVVDFNAQTVAKHTKSI
QLFGQLAGTETRANQIASEYEQGIKEIQKRVAASGQKPPKIYVEFGNKGPAEYSFTFGKNMWGAIANTVGGDNIAAPFIE
NWGPINPEQFLASNPEVVIISGTEMGTDKNAEIMAMGINISEADAQKRLVGFTQRAGWSNVPAVKKGNVYGIYHTASRSI
TDLASAQFMAKTLYPEQFKDIDPEKTYLDFHCQYLPVVPQGTFFIKLK

Sequences:

>Translated_368_residues
MKKQYFKRLIASTLLFAGISAQAEVKVLQDVLDRQVKVDVPAKRVVLGFYYPDYIAATGSENFKHVVGISREFWEKFNPG
SWALFSKALPNLAEMADIGNINAGTFSLEKTLALKPDVLVLADWQYQTIAADIPRIEQAGIPIVVVDFNAQTVAKHTKSI
QLFGQLAGTETRANQIASEYEQGIKEIQKRVAASGQKPPKIYVEFGNKGPAEYSFTFGKNMWGAIANTVGGDNIAAPFIE
NWGPINPEQFLASNPEVVIISGTEMGTDKNAEIMAMGINISEADAQKRLVGFTQRAGWSNVPAVKKGNVYGIYHTASRSI
TDLASAQFMAKTLYPEQFKDIDPEKTYLDFHCQYLPVVPQGTFFIKLK
>Mature_368_residues
MKKQYFKRLIASTLLFAGISAQAEVKVLQDVLDRQVKVDVPAKRVVLGFYYPDYIAATGSENFKHVVGISREFWEKFNPG
SWALFSKALPNLAEMADIGNINAGTFSLEKTLALKPDVLVLADWQYQTIAADIPRIEQAGIPIVVVDFNAQTVAKHTKSI
QLFGQLAGTETRANQIASEYEQGIKEIQKRVAASGQKPPKIYVEFGNKGPAEYSFTFGKNMWGAIANTVGGDNIAAPFIE
NWGPINPEQFLASNPEVVIISGTEMGTDKNAEIMAMGINISEADAQKRLVGFTQRAGWSNVPAVKKGNVYGIYHTASRSI
TDLASAQFMAKTLYPEQFKDIDPEKTYLDFHCQYLPVVPQGTFFIKLK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 40644; Mature: 40644

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQYFKRLIASTLLFAGISAQAEVKVLQDVLDRQVKVDVPAKRVVLGFYYPDYIAATGS
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEEEEEECCCEEEECCC
ENFKHVVGISREFWEKFNPGSWALFSKALPNLAEMADIGNINAGTFSLEKTLALKPDVLV
CCCHHHHCCCHHHHHHCCCCCHHHHHHHCCCHHHHHHCCCCCCCEEEEEEEEECCCCEEE
LADWQYQTIAADIPRIEQAGIPIVVVDFNAQTVAKHTKSIQLFGQLAGTETRANQIASEY
EECCCCEEHHHCCCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EQGIKEIQKRVAASGQKPPKIYVEFGNKGPAEYSFTFGKNMWGAIANTVGGDNIAAPFIE
HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCHHH
NWGPINPEQFLASNPEVVIISGTEMGTDKNAEIMAMGINISEADAQKRLVGFTQRAGWSN
CCCCCCHHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC
VPAVKKGNVYGIYHTASRSITDLASAQFMAKTLYPEQFKDIDPEKTYLDFHCQYLPVVPQ
CCCEECCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEEEEEEEECCC
GTFFIKLK
CEEEEEEC
>Mature Secondary Structure
MKKQYFKRLIASTLLFAGISAQAEVKVLQDVLDRQVKVDVPAKRVVLGFYYPDYIAATGS
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEEEEEECCCEEEECCC
ENFKHVVGISREFWEKFNPGSWALFSKALPNLAEMADIGNINAGTFSLEKTLALKPDVLV
CCCHHHHCCCHHHHHHCCCCCHHHHHHHCCCHHHHHHCCCCCCCEEEEEEEEECCCCEEE
LADWQYQTIAADIPRIEQAGIPIVVVDFNAQTVAKHTKSIQLFGQLAGTETRANQIASEY
EECCCCEEHHHCCCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EQGIKEIQKRVAASGQKPPKIYVEFGNKGPAEYSFTFGKNMWGAIANTVGGDNIAAPFIE
HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCHHH
NWGPINPEQFLASNPEVVIISGTEMGTDKNAEIMAMGINISEADAQKRLVGFTQRAGWSN
CCCCCCHHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC
VPAVKKGNVYGIYHTASRSITDLASAQFMAKTLYPEQFKDIDPEKTYLDFHCQYLPVVPQ
CCCEECCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEEEEEEEECCC
GTFFIKLK
CEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]