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The map label for this gene is yvrC [H]

Identifier: 126209255

GI number: 126209255

Start: 2014341

End: 2015456

Strand: Direct

Name: yvrC [H]

Synonym: APL_1791

Alternate gene names: 126209255

Gene position: 2014341-2015456 (Clockwise)

Preceding gene: 126209253

Following gene: 126209256

Centisome position: 88.56

GC content: 42.74

Gene sequence:

>1116_bases
ATGTTCCAAAGAATCAAATTAACAGCGGTTGCATTTGCAACGTTATTTGCATTATCCGGTTTCGCTAATGCCAAGCCGAC
TGAAATTACCGATGTCCTTGAACGTAAAGTAACGGTCGAATTTCCGGCTAAACGAGTGGTATTGGCTTTTAATTATCAAG
ATTATATGGCAGTCGGTGGCGAAAAAGCATTAGACAATGTGGTTGGCTTTTCTAAAGCGGTTTGGTCCGATTGGGCGCCT
GCAAGCTGGGCGGAATTCAGCAAAGCGGTACCGAAATTAAATCAGTTGGAAGATATTGGTGAAGTGGAGGTCGGAACGTT
CTCAATCGAGAAAATTTTAGCGCTGAAACCGGACTTCGTGTTAATGGCGGATTGGCAATTTAAAGCGTTAGATTCGGATT
TAGAACCGCTAGAAACAGCAGGCATTCCGGTTGTCGTAGTGGATTATTTAGCGCAAACGGTTGATAAACACGTGAAATCT
ACCGAGATTATCGGTCAATTAACCGGACAAGAAGCCAAAGCAAAACAGTTAAACGAAGAATACAAGGCAATTGTGAAAGA
GATTCAAGATCGTGTTGCAAAGGCTAACTTACCGAAACCAAAAGTGTATGTTGAATTTGGAAATAAAGGGCCGGCAGAGC
ATAGTTTTACTTTCGGTAAAAGTATGTGGGGCGCAATGATTGATTTGGTCGGTGCAGAAAATATTGCTAAAAATGCGGTG
GAATTTTATAGCCCGATTAACCCTGAATTAGTGGTAGCGGCTAAACCGGATGTGGTGATCATTTCCGGACGAGAAACCGA
GTTGAAGAAAAATCCGGAAGCAATGGTAGCGGGCTTTAATATTGATAAACAAGAAGCGCAAAAACGCTTAGCCGGCTTTG
CAAAACGCCCGGGTTGGTCTGAATTACCGGCGATTAAAAATCAGCGTTTATACGGTGTATATCATGCCAATTCGCGTACG
CTTTCCGATAGCGCTTCAATTCAATTTGTGGCAAAAGCGATTTATCCTGAGCTATTCAAGGATTTAGATCCGACCAAAAC
CTATCAAGAGTTTTATCGTAAAAACTTGCCTCTCGTGCCGCAAGGGACCTTCTATCTCTACCCAGAGAGTAAATAG

Upstream 100 bases:

>100_bases
TCACAAAATTTGATAAAAAACAACTAATAATGATTTTCATTTGATTAAAATAGACTAGAATGAATACTATGATATTTAGG
ATGACTTTTAAGGTGGGTTT

Downstream 100 bases:

>100_bases
GCATGAGTCATTTAACGGTTGAAAAGATCGTTCAAAACCAACGCAAGCTGGAACGCAAGCGTTGGTTTATCGTTCTTACT
TTCCTTGCAATCAGTTTAAT

Product: putative periplasmic iron/siderophore binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MFQRIKLTAVAFATLFALSGFANAKPTEITDVLERKVTVEFPAKRVVLAFNYQDYMAVGGEKALDNVVGFSKAVWSDWAP
ASWAEFSKAVPKLNQLEDIGEVEVGTFSIEKILALKPDFVLMADWQFKALDSDLEPLETAGIPVVVVDYLAQTVDKHVKS
TEIIGQLTGQEAKAKQLNEEYKAIVKEIQDRVAKANLPKPKVYVEFGNKGPAEHSFTFGKSMWGAMIDLVGAENIAKNAV
EFYSPINPELVVAAKPDVVIISGRETELKKNPEAMVAGFNIDKQEAQKRLAGFAKRPGWSELPAIKNQRLYGVYHANSRT
LSDSASIQFVAKAIYPELFKDLDPTKTYQEFYRKNLPLVPQGTFYLYPESK

Sequences:

>Translated_371_residues
MFQRIKLTAVAFATLFALSGFANAKPTEITDVLERKVTVEFPAKRVVLAFNYQDYMAVGGEKALDNVVGFSKAVWSDWAP
ASWAEFSKAVPKLNQLEDIGEVEVGTFSIEKILALKPDFVLMADWQFKALDSDLEPLETAGIPVVVVDYLAQTVDKHVKS
TEIIGQLTGQEAKAKQLNEEYKAIVKEIQDRVAKANLPKPKVYVEFGNKGPAEHSFTFGKSMWGAMIDLVGAENIAKNAV
EFYSPINPELVVAAKPDVVIISGRETELKKNPEAMVAGFNIDKQEAQKRLAGFAKRPGWSELPAIKNQRLYGVYHANSRT
LSDSASIQFVAKAIYPELFKDLDPTKTYQEFYRKNLPLVPQGTFYLYPESK
>Mature_371_residues
MFQRIKLTAVAFATLFALSGFANAKPTEITDVLERKVTVEFPAKRVVLAFNYQDYMAVGGEKALDNVVGFSKAVWSDWAP
ASWAEFSKAVPKLNQLEDIGEVEVGTFSIEKILALKPDFVLMADWQFKALDSDLEPLETAGIPVVVVDYLAQTVDKHVKS
TEIIGQLTGQEAKAKQLNEEYKAIVKEIQDRVAKANLPKPKVYVEFGNKGPAEHSFTFGKSMWGAMIDLVGAENIAKNAV
EFYSPINPELVVAAKPDVVIISGRETELKKNPEAMVAGFNIDKQEAQKRLAGFAKRPGWSELPAIKNQRLYGVYHANSRT
LSDSASIQFVAKAIYPELFKDLDPTKTYQEFYRKNLPLVPQGTFYLYPESK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 41310; Mature: 41310

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQRIKLTAVAFATLFALSGFANAKPTEITDVLERKVTVEFPAKRVVLAFNYQDYMAVGG
CCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCEEEECCCCEEEEEECCHHHHHCCC
EKALDNVVGFSKAVWSDWAPASWAEFSKAVPKLNQLEDIGEVEVGTFSIEKILALKPDFV
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCEEECHHHHHHHHHCCCCEE
LMADWQFKALDSDLEPLETAGIPVVVVDYLAQTVDKHVKSTEIIGQLTGQEAKAKQLNEE
EEECCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
YKAIVKEIQDRVAKANLPKPKVYVEFGNKGPAEHSFTFGKSMWGAMIDLVGAENIAKNAV
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EFYSPINPELVVAAKPDVVIISGRETELKKNPEAMVAGFNIDKQEAQKRLAGFAKRPGWS
HHHCCCCCCEEEEECCCEEEEECCCHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCC
ELPAIKNQRLYGVYHANSRTLSDSASIQFVAKAIYPELFKDLDPTKTYQEFYRKNLPLVP
CCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC
QGTFYLYPESK
CCEEEEECCCC
>Mature Secondary Structure
MFQRIKLTAVAFATLFALSGFANAKPTEITDVLERKVTVEFPAKRVVLAFNYQDYMAVGG
CCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCEEEECCCCEEEEEECCHHHHHCCC
EKALDNVVGFSKAVWSDWAPASWAEFSKAVPKLNQLEDIGEVEVGTFSIEKILALKPDFV
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCEEECHHHHHHHHHCCCCEE
LMADWQFKALDSDLEPLETAGIPVVVVDYLAQTVDKHVKSTEIIGQLTGQEAKAKQLNEE
EEECCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
YKAIVKEIQDRVAKANLPKPKVYVEFGNKGPAEHSFTFGKSMWGAMIDLVGAENIAKNAV
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EFYSPINPELVVAAKPDVVIISGRETELKKNPEAMVAGFNIDKQEAQKRLAGFAKRPGWS
HHHCCCCCCEEEEECCCEEEEECCCHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCC
ELPAIKNQRLYGVYHANSRTLSDSASIQFVAKAIYPELFKDLDPTKTYQEFYRKNLPLVP
CCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC
QGTFYLYPESK
CCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]