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The map label for this gene is rimM

Identifier: 126209251

GI number: 126209251

Start: 2011046

End: 2011573

Strand: Direct

Name: rimM

Synonym: APL_1787

Alternate gene names: 126209251

Gene position: 2011046-2011573 (Clockwise)

Preceding gene: 126209250

Following gene: 126209252

Centisome position: 88.42

GC content: 40.72

Gene sequence:

>528_bases
ATGAGCGAACAAAAAATTGAAGTTGTCGGAAAACTAGGATCAACCTATGGGATTCGTGGCTGGTTACGCCTCTATTCATC
AACTGAAGAAACCGAAAGCATTTTCGATTATCAGCCTTGGTTCTTAAAAATTAAGGGACAATGGCAACCAATTGAATTAG
AAAGTTGGCGTTACCATAACAACGATTTGATTGTGAAATTAAAAGGTAGCGATGACCGTGAGAGCGCACAGTTGCTGACT
AATGCCGAAATCGGTGTAGATCTATCTGTGTTTCCTGAATTGGAAGAAGGAGATTATTACTGGCACGATTTAATCGGCTG
CCAAGTGATAAACCTTGAAGACTATAGCATGGGCGTTGTAACCGAATTAATGGAAACAGGTTCGAACGATGTTTTGGTTG
TACGCGCTAACAGTAAGGATGCTTTTGGCAAGCAAGAACGATTAATTCCGTTCTTATATGAACAAGTAGTTAAAAGAGTA
GATCTCGCCACCAAGACAATTACGGTGGATTGGGACGCTGGTTTCTAA

Upstream 100 bases:

>100_bases
TGCTAAAGGTGCTGATCTTTCAGACCGTGTTGCATCTTTAGTAAAAGAAGCTCGTAAAGCGGCTTAATTTTTTAAAAATT
TTGCAAAGTAGGTGGGTAGT

Downstream 100 bases:

>100_bases
CCTCAGGTATGCGGTGCAGCTTTAACTTTAAGTAGTAAGAACATTTGAGGATAAATTATGTGGATTGGTATCATTTCACT
GTTCCCCGAAATGTTTAAAG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSEQKIEVVGKLGSTYGIRGWLRLYSSTEETESIFDYQPWFLKIKGQWQPIELESWRYHNNDLIVKLKGSDDRESAQLLT
NAEIGVDLSVFPELEEGDYYWHDLIGCQVINLEDYSMGVVTELMETGSNDVLVVRANSKDAFGKQERLIPFLYEQVVKRV
DLATKTITVDWDAGF

Sequences:

>Translated_175_residues
MSEQKIEVVGKLGSTYGIRGWLRLYSSTEETESIFDYQPWFLKIKGQWQPIELESWRYHNNDLIVKLKGSDDRESAQLLT
NAEIGVDLSVFPELEEGDYYWHDLIGCQVINLEDYSMGVVTELMETGSNDVLVVRANSKDAFGKQERLIPFLYEQVVKRV
DLATKTITVDWDAGF
>Mature_174_residues
SEQKIEVVGKLGSTYGIRGWLRLYSSTEETESIFDYQPWFLKIKGQWQPIELESWRYHNNDLIVKLKGSDDRESAQLLTN
AEIGVDLSVFPELEEGDYYWHDLIGCQVINLEDYSMGVVTELMETGSNDVLVVRANSKDAFGKQERLIPFLYEQVVKRVD
LATKTITVDWDAGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=168, Percent_Identity=66.6666666666667, Blast_Score=252, Evalue=1e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_ACTP2 (A3N385)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001054476.1
- ProteinModelPortal:   A3N385
- SMR:   A3N385
- STRING:   A3N385
- GeneID:   4849140
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_1787
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   A3N385
- ProtClustDB:   PRK00122
- BioCyc:   APLE416269:APL_1787-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20151; Mature: 20020

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQKIEVVGKLGSTYGIRGWLRLYSSTEETESIFDYQPWFLKIKGQWQPIELESWRYHN
CCCCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCCEEECCEEEEC
NDLIVKLKGSDDRESAQLLTNAEIGVDLSVFPELEEGDYYWHDLIGCQVINLEDYSMGVV
CCEEEEECCCCCCCHHHEEECCCCCEEEEECCCCCCCCEEEEECCCEEEEEECCCCHHHH
TELMETGSNDVLVVRANSKDAFGKQERLIPFLYEQVVKRVDLATKTITVDWDAGF
HHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCC
>Mature Secondary Structure 
SEQKIEVVGKLGSTYGIRGWLRLYSSTEETESIFDYQPWFLKIKGQWQPIELESWRYHN
CCCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCCEEECCEEEEC
NDLIVKLKGSDDRESAQLLTNAEIGVDLSVFPELEEGDYYWHDLIGCQVINLEDYSMGVV
CCEEEEECCCCCCCHHHEEECCCCCEEEEECCCCCCCCEEEEECCCEEEEEECCCCHHHH
TELMETGSNDVLVVRANSKDAFGKQERLIPFLYEQVVKRVDLATKTITVDWDAGF
HHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA