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The map label for this gene is 126209195

Identifier: 126209195

GI number: 126209195

Start: 1968119

End: 1968505

Strand: Direct

Name: 126209195

Synonym: APL_1731

Alternate gene names: NA

Gene position: 1968119-1968505 (Clockwise)

Preceding gene: 126209194

Following gene: 126209197

Centisome position: 86.53

GC content: 38.24

Gene sequence:

>387_bases
ATGCTTGATACTAACATTGCGATTTATGTGATTAAACGCAGACCTATTGAAGTGCTGGATAAGTTTAATTTAAATTCTAC
CCGTCTTTGTATAAGTAGTATCACTGCAGCGGAGCTGTATTATGGTGCAGAGAAAAGCCAGTTTCCGGAACGAAATATGG
CAGTAATTGAGGATTTTCTTTCTCGTTTAACGATTCTTGATTATACGCATAAGGCGGCTACTCACTTTGGCAATATCAAA
GCACATTTATCTAAGCAAGGTAAGATCATTGGCGAGAACGATATTCATATTGCCGCACATGCAAGAAGTGAAGGACTCGT
ATTAGTAACCAATAACTTGCGTGAATTTGAACGTGTGGAAGGATTGCGATTAGATAATTGGGTATAG

Upstream 100 bases:

>100_bases
ATAGCTTCTTTCTGAGTTCGGCAACGGTAAGCGATGATTTCATGACAGAGCGTGAAATCAGCACTCAAGCCGAACGTGAG
GAACTATAATGCTAACTTAT

Downstream 100 bases:

>100_bases
TTTTGTGACTTTGATAATACTTGCCCTCTAATGAGGGCTTTTAAATATTTCCAGATAACAAACAAGCGGTTAAATTCCCT
TATAATTTTGCAAAAAATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MLDTNIAIYVIKRRPIEVLDKFNLNSTRLCISSITAAELYYGAEKSQFPERNMAVIEDFLSRLTILDYTHKAATHFGNIK
AHLSKQGKIIGENDIHIAAHARSEGLVLVTNNLREFERVEGLRLDNWV

Sequences:

>Translated_128_residues
MLDTNIAIYVIKRRPIEVLDKFNLNSTRLCISSITAAELYYGAEKSQFPERNMAVIEDFLSRLTILDYTHKAATHFGNIK
AHLSKQGKIIGENDIHIAAHARSEGLVLVTNNLREFERVEGLRLDNWV
>Mature_128_residues
MLDTNIAIYVIKRRPIEVLDKFNLNSTRLCISSITAAELYYGAEKSQFPERNMAVIEDFLSRLTILDYTHKAATHFGNIK
AHLSKQGKIIGENDIHIAAHARSEGLVLVTNNLREFERVEGLRLDNWV

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 14597; Mature: 14597

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDTNIAIYVIKRRPIEVLDKFNLNSTRLCISSITAAELYYGAEKSQFPERNMAVIEDFL
CCCCCEEEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
SRLTILDYTHKAATHFGNIKAHLSKQGKIIGENDIHIAAHARSEGLVLVTNNLREFERVE
HHHHHHHCCHHHHHHCCCCEEEECCCCCEECCCCEEEEEECCCCCEEEEECCCHHHHHHC
GLRLDNWV
CCCCCCCC
>Mature Secondary Structure
MLDTNIAIYVIKRRPIEVLDKFNLNSTRLCISSITAAELYYGAEKSQFPERNMAVIEDFL
CCCCCEEEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
SRLTILDYTHKAATHFGNIKAHLSKQGKIIGENDIHIAAHARSEGLVLVTNNLREFERVE
HHHHHHHCCHHHHHHCCCCEEEECCCCCEECCCCEEEEEECCCCCEEEEECCCHHHHHHC
GLRLDNWV
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]