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The map label for this gene is sgbU [H]

Identifier: 126209167

GI number: 126209167

Start: 1935413

End: 1936273

Strand: Direct

Name: sgbU [H]

Synonym: APL_1703

Alternate gene names: 126209167

Gene position: 1935413-1936273 (Clockwise)

Preceding gene: 126209166

Following gene: 126209168

Centisome position: 85.09

GC content: 41.46

Gene sequence:

>861_bases
ATGAGAAAACATAAGTTGGGAATTTACGAAAAAGCATTACCTAAAAATATTTCTTGGCAAGACAGACTTTCGATTGCTAA
AGCGTGCGGTTTTGATTTTGTAGAAATGTCCGTAGATGAAACGGATGAACGTTTAGCTCGCTTAGATTGGACTAAAGAAC
AACGAATCGAATTAGTCAAAGCGATCATCAATACCGGCGTGACTATTCCGTCAATGTGTTTATCCGGTCATCGCCGCTTC
CCGTTCGGATCTCGTGATGAAGCCACTCGTCAAAAAGCCTATGAAATTATGGAAAAAGCGATCCGACTTGCGGTGGATTT
AGGTATTCGTACCATTCAATTAGCCGGTTATGACGTGTATTACGAAGAACAAGACGAAGGCACGATTGAACGTTTCCAAC
AAGGCTTAGAATGGGCGACGGAACTGGCGGCAAGTAATCAAGTGACCCTTGCGGTAGAGATTATGGATACCAAGTTTATG
AGTTCGATTAAACGTTGGAAAAAATGGGACGAAATTATCAAGTCGCCATGGTTTACCGTTTATCCGGATATCGGCAACGT
TTCGGCTTGGAATGATGATATTGAAGCGGAATTTGCCTTAGGTATTGATAAAATCTCAGCAATTCATTTAAAAGATACCT
ATAAAGTTACCGAAACTTGCAAAGGACAATTCCGTGACGTACCGTTCGGTGACGGTTGTGTGGACTTCAAAGGTTTCTTC
GAGATCTTGGCAAAATTAAATTATCGCGGTGCATTCTTAATTGAAATGTGGACGGAAAAAGCGGAAGAGCCGATTGCGGA
AATTATTAATGCCCGCCGTTGGATTGAACAAAAAATGAAAGAGGGTGGTTTCCAATGCTAA

Upstream 100 bases:

>100_bases
ATCATTCTTGCCTAGCTTAACGATATATCGGAATATATAAACAAGCGGTTAAAAAGTTTTGTTTTTTTACTAAAAATATT
ACTCAAACCGGGGGATGAAT

Downstream 100 bases:

>100_bases
CAGAATTATCTCCAAAATTACTTGCGATGCGTGATCGCGTATTTAAAGCGAATCTTGAATTACCAAAATATAAATTAGCC
ACCTTTACTTGGGGTAACGT

Product: putative L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: HUMPI [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MRKHKLGIYEKALPKNISWQDRLSIAKACGFDFVEMSVDETDERLARLDWTKEQRIELVKAIINTGVTIPSMCLSGHRRF
PFGSRDEATRQKAYEIMEKAIRLAVDLGIRTIQLAGYDVYYEEQDEGTIERFQQGLEWATELAASNQVTLAVEIMDTKFM
SSIKRWKKWDEIIKSPWFTVYPDIGNVSAWNDDIEAEFALGIDKISAIHLKDTYKVTETCKGQFRDVPFGDGCVDFKGFF
EILAKLNYRGAFLIEMWTEKAEEPIAEIINARRWIEQKMKEGGFQC

Sequences:

>Translated_286_residues
MRKHKLGIYEKALPKNISWQDRLSIAKACGFDFVEMSVDETDERLARLDWTKEQRIELVKAIINTGVTIPSMCLSGHRRF
PFGSRDEATRQKAYEIMEKAIRLAVDLGIRTIQLAGYDVYYEEQDEGTIERFQQGLEWATELAASNQVTLAVEIMDTKFM
SSIKRWKKWDEIIKSPWFTVYPDIGNVSAWNDDIEAEFALGIDKISAIHLKDTYKVTETCKGQFRDVPFGDGCVDFKGFF
EILAKLNYRGAFLIEMWTEKAEEPIAEIINARRWIEQKMKEGGFQC
>Mature_286_residues
MRKHKLGIYEKALPKNISWQDRLSIAKACGFDFVEMSVDETDERLARLDWTKEQRIELVKAIINTGVTIPSMCLSGHRRF
PFGSRDEATRQKAYEIMEKAIRLAVDLGIRTIQLAGYDVYYEEQDEGTIERFQQGLEWATELAASNQVTLAVEIMDTKFM
SSIKRWKKWDEIIKSPWFTVYPDIGNVSAWNDDIEAEFALGIDKISAIHLKDTYKVTETCKGQFRDVPFGDGCVDFKGFF
EILAKLNYRGAFLIEMWTEKAEEPIAEIINARRWIEQKMKEGGFQC

Specific function: Isomerization of D-arabino-6-hexulose 3-phosphate to D- fructose 6-phosphate [H]

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family [H]

Homologues:

Organism=Escherichia coli, GI87082294, Length=286, Percent_Identity=72.7272727272727, Blast_Score=450, Evalue=1e-128,
Organism=Escherichia coli, GI1790641, Length=279, Percent_Identity=54.8387096774194, Blast_Score=326, Evalue=8e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 5.-.-.-

Molecular weight: Translated: 33081; Mature: 33081

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKHKLGIYEKALPKNISWQDRLSIAKACGFDFVEMSVDETDERLARLDWTKEQRIELVK
CCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCHHEEECCCHHHHHHHHHCCCHHHHHHHHH
AIINTGVTIPSMCLSGHRRFPFGSRDEATRQKAYEIMEKAIRLAVDLGIRTIQLAGYDVY
HHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEE
YEEQDEGTIERFQQGLEWATELAASNQVTLAVEIMDTKFMSSIKRWKKWDEIIKSPWFTV
EECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
YPDIGNVSAWNDDIEAEFALGIDKISAIHLKDTYKVTETCKGQFRDVPFGDGCVDFKGFF
CCCCCCCCCCCCCCCHHHHHCHHHHEEEEECCHHHHHHHHCCCCCCCCCCCCCCCHHHHH
EILAKLNYRGAFLIEMWTEKAEEPIAEIINARRWIEQKMKEGGFQC
HHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRKHKLGIYEKALPKNISWQDRLSIAKACGFDFVEMSVDETDERLARLDWTKEQRIELVK
CCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCHHEEECCCHHHHHHHHHCCCHHHHHHHHH
AIINTGVTIPSMCLSGHRRFPFGSRDEATRQKAYEIMEKAIRLAVDLGIRTIQLAGYDVY
HHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEE
YEEQDEGTIERFQQGLEWATELAASNQVTLAVEIMDTKFMSSIKRWKKWDEIIKSPWFTV
EECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
YPDIGNVSAWNDDIEAEFALGIDKISAIHLKDTYKVTETCKGQFRDVPFGDGCVDFKGFF
CCCCCCCCCCCCCCCHHHHHCHHHHEEEEECCHHHHHHHHCCCCCCCCCCCCCCCHHHHH
EILAKLNYRGAFLIEMWTEKAEEPIAEIINARRWIEQKMKEGGFQC
HHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]