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The map label for this gene is ureF

Identifier: 126209077

GI number: 126209077

Start: 1839033

End: 1839716

Strand: Reverse

Name: ureF

Synonym: APL_1613

Alternate gene names: 126209077

Gene position: 1839716-1839033 (Counterclockwise)

Preceding gene: 126209078

Following gene: 126209076

Centisome position: 80.89

GC content: 45.32

Gene sequence:

>684_bases
ATGGGGCAGTTAGGGGCGTTGTTACACTTAGTCGATCCTACATTGCCGATCGGCGGCTTTAATCATTCCAATGGCTTGGA
AACCTTTGTACAACAAGGCAAAGTGAACAGTCGAGCCAGTCTTGAAGAGTATGTTCAAACCCAGCTGATGCAGAACTGGA
TTTACAATGACGGGGCGTATTTGTCGTTAGCATTTGATGCAATGGCAAATCACGATTTAGACCGATTGTTGCAACTAGAT
CAAGAACTTGCTGCCAGTAAAATCGCTCGTGAGAGTCGAGAGGGCAGTTATAAATTAGGTGTACGATTGCTGAAGATTTT
TATTCGTTATGAAAATCATCCGTTATTGAGCGAATTTCAGCAAGCGATCAGCGAAAAACGTTGTCAGGGTTATTTTCCCA
TCGTGTTTGCGATGGTGGCTCAAGCGATGAATCTTGATAAAGCCGAAACGCTCTATGCGTTTTACTACAATGCGGCGGTC
GGGGTGGTGACTAACGGCGTGAAACTGGTACCGTTAAGCCAAATGGACGGGCAAGATATTTTATTTGCACTACGCACACC
ACTGGCACAAGCGGTCGAAAATAGCCTAAATCCTGACCTCGACTGGCTTGGTGCGGCAACGCTGGCAAGCGATATTCGCT
CAATGCAACACGAACAGCTTTATACAAGACTTTATATGTCTTAA

Upstream 100 bases:

>100_bases
AGGGACACGGACATTCACACGGGCATAGCCATTCGCACGATCATCACGGCTATCATCATCACGGAGACGGAAATTGGCAC
AAGCACTAGATTTCGCCCGG

Downstream 100 bases:

>100_bases
TTTGAATAATAGGAAAACCAATGCGTAAATATATCAAAATCGGGGTGGCAGGCCCTGTGGGAGCGGGGAAAACCGCGTTA
ATCGAACGTTTAACTCGTGA

Product: urease accessory protein UreF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MGQLGALLHLVDPTLPIGGFNHSNGLETFVQQGKVNSRASLEEYVQTQLMQNWIYNDGAYLSLAFDAMANHDLDRLLQLD
QELAASKIARESREGSYKLGVRLLKIFIRYENHPLLSEFQQAISEKRCQGYFPIVFAMVAQAMNLDKAETLYAFYYNAAV
GVVTNGVKLVPLSQMDGQDILFALRTPLAQAVENSLNPDLDWLGAATLASDIRSMQHEQLYTRLYMS

Sequences:

>Translated_227_residues
MGQLGALLHLVDPTLPIGGFNHSNGLETFVQQGKVNSRASLEEYVQTQLMQNWIYNDGAYLSLAFDAMANHDLDRLLQLD
QELAASKIARESREGSYKLGVRLLKIFIRYENHPLLSEFQQAISEKRCQGYFPIVFAMVAQAMNLDKAETLYAFYYNAAV
GVVTNGVKLVPLSQMDGQDILFALRTPLAQAVENSLNPDLDWLGAATLASDIRSMQHEQLYTRLYMS
>Mature_226_residues
GQLGALLHLVDPTLPIGGFNHSNGLETFVQQGKVNSRASLEEYVQTQLMQNWIYNDGAYLSLAFDAMANHDLDRLLQLDQ
ELAASKIARESREGSYKLGVRLLKIFIRYENHPLLSEFQQAISEKRCQGYFPIVFAMVAQAMNLDKAETLYAFYYNAAVG
VVTNGVKLVPLSQMDGQDILFALRTPLAQAVENSLNPDLDWLGAATLASDIRSMQHEQLYTRLYMS

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0830

COG function: function code O; Urease accessory protein UreF

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UREF_ACTP2 (A3N2R1)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001054302.1
- STRING:   A3N2R1
- GeneID:   4848971
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_1613
- eggNOG:   COG0830
- HOGENOM:   HBG296674
- OMA:   FIRYETH
- ProtClustDB:   CLSK918302
- BioCyc:   APLE416269:APL_1613-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01385
- InterPro:   IPR002639
- PIRSF:   PIRSF009467

Pfam domain/function: PF01730 UreF

EC number: NA

Molecular weight: Translated: 25468; Mature: 25337

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQLGALLHLVDPTLPIGGFNHSNGLETFVQQGKVNSRASLEEYVQTQLMQNWIYNDGAY
CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCE
LSLAFDAMANHDLDRLLQLDQELAASKIARESREGSYKLGVRLLKIFIRYENHPLLSEFQ
EEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH
QAISEKRCQGYFPIVFAMVAQAMNLDKAETLYAFYYNAAVGVVTNGVKLVPLSQMDGQDI
HHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHH
LFALRTPLAQAVENSLNPDLDWLGAATLASDIRSMQHEQLYTRLYMS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GQLGALLHLVDPTLPIGGFNHSNGLETFVQQGKVNSRASLEEYVQTQLMQNWIYNDGAY
CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCE
LSLAFDAMANHDLDRLLQLDQELAASKIARESREGSYKLGVRLLKIFIRYENHPLLSEFQ
EEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH
QAISEKRCQGYFPIVFAMVAQAMNLDKAETLYAFYYNAAVGVVTNGVKLVPLSQMDGQDI
HHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHH
LFALRTPLAQAVENSLNPDLDWLGAATLASDIRSMQHEQLYTRLYMS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA