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The map label for this gene is yecS [C]

Identifier: 126209068

GI number: 126209068

Start: 1832485

End: 1833168

Strand: Reverse

Name: yecS [C]

Synonym: APL_1604

Alternate gene names: 126209068

Gene position: 1833168-1832485 (Counterclockwise)

Preceding gene: 126209069

Following gene: 126209067

Centisome position: 80.6

GC content: 46.64

Gene sequence:

>684_bases
ATGGATGAAGCGCGTGTGAAATTGGTGATGGATGCCTTTTTCCCCATGGTTGAAGCGGCGGTCTTAGTTTCGATTCCGCT
AGCAATCGCTTCTTTTATTATCGGGATGGCGATTGCAGTCGGTGTTGCTTTAATTCGGGTGACGCCGGTAAACGGTATGC
TGCATCGCATTGCTCTTGCGATTGTTAAAGTATATATCTCGATTATCCGAGGCACGCCGATGTTGGTGCAAATCTCGGTA
GTGTTTTACGGCTTACCGGCGATCGGTGTGTATATTGATCCGATTCCGGCGGCGATTATCGGTTTCTCTCTGAATATCGG
AGCATACGGTTCGGAAACCGTACGCGCGGCAATTTCTTCGGTACCGAAAGGGCAATGGGAGGCCGGTTATACCATCGGTA
TGACTTATATGCAAACCTTCCGCCGGATTATTGCACCGCAAGCAATTCGAGTCGTTATACCGCCGTTAAGTAATACTTTT
ATCGGTTTGTTTAAAGATACTTCATTGGCTTCTGTGGTAACCGTAACGGAAATGTTCCGTGTCGCACAACAAATGGCGAA
TATGTCCTACGACTTCTTGCCGGTATATATTGAGGCGGGTTTAATTTACTGGTGTTTCTGCTGGGTACTTTTCTTGATTC
AAGCAAAACTCGAACGCCGCTTTAACTGCTTTGTGGCGAAATAA

Upstream 100 bases:

>100_bases
CTAGACGTGTACATTTCCATTTATATCCCTTAGAATTTGGTCAAATTAATTTTTATTAGGACAGTCTGTGTTAGAAAATT
TGTTACTGCAAATTCCATTT

Downstream 100 bases:

>100_bases
TGGTTAATCACGGAAAACAAAATGATCAAAATTAGCAATATTCATAAAACCTTTGGCGACAACACGATTTTACGAGGCAT
CGAGCTGGAAATTAAAAAAG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MDEARVKLVMDAFFPMVEAAVLVSIPLAIASFIIGMAIAVGVALIRVTPVNGMLHRIALAIVKVYISIIRGTPMLVQISV
VFYGLPAIGVYIDPIPAAIIGFSLNIGAYGSETVRAAISSVPKGQWEAGYTIGMTYMQTFRRIIAPQAIRVVIPPLSNTF
IGLFKDTSLASVVTVTEMFRVAQQMANMSYDFLPVYIEAGLIYWCFCWVLFLIQAKLERRFNCFVAK

Sequences:

>Translated_227_residues
MDEARVKLVMDAFFPMVEAAVLVSIPLAIASFIIGMAIAVGVALIRVTPVNGMLHRIALAIVKVYISIIRGTPMLVQISV
VFYGLPAIGVYIDPIPAAIIGFSLNIGAYGSETVRAAISSVPKGQWEAGYTIGMTYMQTFRRIIAPQAIRVVIPPLSNTF
IGLFKDTSLASVVTVTEMFRVAQQMANMSYDFLPVYIEAGLIYWCFCWVLFLIQAKLERRFNCFVAK
>Mature_227_residues
MDEARVKLVMDAFFPMVEAAVLVSIPLAIASFIIGMAIAVGVALIRVTPVNGMLHRIALAIVKVYISIIRGTPMLVQISV
VFYGLPAIGVYIDPIPAAIIGFSLNIGAYGSETVRAAISSVPKGQWEAGYTIGMTYMQTFRRIIAPQAIRVVIPPLSNTF
IGLFKDTSLASVVTVTEMFRVAQQMANMSYDFLPVYIEAGLIYWCFCWVLFLIQAKLERRFNCFVAK

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=220, Percent_Identity=43.6363636363636, Blast_Score=190, Evalue=6e-50,
Organism=Escherichia coli, GI1787030, Length=170, Percent_Identity=36.4705882352941, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87082239, Length=211, Percent_Identity=34.5971563981043, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1788646, Length=227, Percent_Identity=31.2775330396476, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787086, Length=223, Percent_Identity=30.4932735426009, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787087, Length=218, Percent_Identity=28.4403669724771, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786873, Length=218, Percent_Identity=27.9816513761468, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788645, Length=212, Percent_Identity=27.3584905660377, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1786874, Length=180, Percent_Identity=27.2222222222222, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI48994930, Length=158, Percent_Identity=32.2784810126582, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24967; Mature: 24967

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEARVKLVMDAFFPMVEAAVLVSIPLAIASFIIGMAIAVGVALIRVTPVNGMLHRIALA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHH
IVKVYISIIRGTPMLVQISVVFYGLPAIGVYIDPIPAAIIGFSLNIGAYGSETVRAAISS
HHHHHHHHHCCCCHHEEHHHHHHCCCHHCEEECCHHHHHHHHEECCCCCCHHHHHHHHHH
VPKGQWEAGYTIGMTYMQTFRRIIAPQAIRVVIPPLSNTFIGLFKDTSLASVVTVTEMFR
CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHH
VAQQMANMSYDFLPVYIEAGLIYWCFCWVLFLIQAKLERRFNCFVAK
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MDEARVKLVMDAFFPMVEAAVLVSIPLAIASFIIGMAIAVGVALIRVTPVNGMLHRIALA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHH
IVKVYISIIRGTPMLVQISVVFYGLPAIGVYIDPIPAAIIGFSLNIGAYGSETVRAAISS
HHHHHHHHHCCCCHHEEHHHHHHCCCHHCEEECCHHHHHHHHEECCCCCCHHHHHHHHHH
VPKGQWEAGYTIGMTYMQTFRRIIAPQAIRVVIPPLSNTFIGLFKDTSLASVVTVTEMFR
CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHH
VAQQMANMSYDFLPVYIEAGLIYWCFCWVLFLIQAKLERRFNCFVAK
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]