| Definition | Actinobacillus pleuropneumoniae serovar 5b str. L20 chromosome, complete genome. |
|---|---|
| Accession | NC_009053 |
| Length | 2,274,482 |
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The map label for this gene is tbpA [H]
Identifier: 126209031
GI number: 126209031
Start: 1793088
End: 1795895
Strand: Reverse
Name: tbpA [H]
Synonym: APL_1567
Alternate gene names: 126209031
Gene position: 1795895-1793088 (Counterclockwise)
Preceding gene: 126209032
Following gene: 126209030
Centisome position: 78.96
GC content: 39.49
Gene sequence:
>2808_bases ATGAAAAATAAATTAAATCTGATTAGCCTTGCTCTGCTTAGCCTCTTTGCCGTACAAAGCTATGCAGAACAAGCGGTGCA ATTGAACGATGTTTATGTCACAGGAACAAAAAAGAAAGCACATAAAAAAGAGAACGAAGTCACAGGCTTAGGGAAAGTAG TTAAAACACCAGATACTCTTAGTAAGGAGCAAGTGTTAGGAATACGAGATCTGACTCGTTACGACCCCGGTATTTCTGTC GTAGAACAAGGGAGAGGTGCGACTACAGGCTACTCAATTCGTGGGGTAGATCGTAACCGTGTTGGCTTGGCATTAGATGG TTTACCACAGATTCAGTCCTATGTAAGCCAGTATTCACGTTCCTCAAGCGGTGCCATTAATGAAATAGAATACGAAAATC TGCGTTCGATCCAAATTAGTAAAGGGGCTAGTTCTTCTGAGTTTGGTAGTGGCTCACTAGGCGGTTCGGTGCAATTCCGT ACCAAAGAGGTAAGCGACATTATTAAGCCAGGGCAATCTTGGGGATTAGATACCAAAAGTGCCTACAGTAGCAAAAATCA ACAATGGTTAAACTCACTTGCTTTTGCTGGTACTCACAATGGCTTTGATGCTCTTGTGATTTACACTCACCGTGATGGTA AGGAAACGAAAGCTCATAAAAATGCAGAGAGTCGTTCTCAGAATATCACCCGAGTAGGAGTGGAAACCAACGAGCTTGAT ACCTCAAATAGATATACTGCGACGACGAATAATCAACATACTTATGGCTGGTTTTTGATTAAAGATGAATGTCCAACGTT AGATTGTACGCCGAAACAGATGGCTAGGGTGACAAAAGATACGCCATCTTTCCGTTCTTACCCTGAATATACTCCTGAGG AAAAACAGGCTTATGAGAACCAAAAACATATTACAGAGCGTCTAAATGCTCAGGATTACACTGGTGAATATAGAGCTTTA CCTGATCCGCTTAAATATAAATCTGATTCTTGGCTGGTTAAATTAGGATACACATTCTCTCCGAAACATTATGTCGCTGG TACTTATGAACATAGCAAACAGCGTTACGACACCCGAGATATGACCTATACCGCTTATTGGCAACCATCGGATTTACTTA GAACTGGTAGAAATTGGTATCCAATGAATAATGCTAAAGGATTATATCGTGATAATGCTTTAGATGGTGTTGCTATTGAC TACTTTACGGAAGATGGTGTGAAATCCTCAAAAGGTTTACGTTGGGCAAAAGCTCGTTTTATTGACGAGTGGCACACTCG TGATCGCTTAGGTGCTTTATATCGTTATACTAATCAAGATGGAAATCGTCTGATTGATAGACTATCCTTGAGTTTCGATC AGCAAAAAATTAATTTATCTACCCGCTTGAGAGAAAACAACTGTTCGGAATATCCAACCATAGATAAGAATTGCCGTGCA ACTCTTGATAAACTTTGGTCTTCTACTAAAAATGAGCAAAGTTCTTATGAAGAAAAACACGACACTATTCAGCTCTCGTT AGATAAAACCGTACAAACGGGATTGGGTAAACATCAATTAAATATGTTATTAGGTTCAGACCGTTTCAATTCCACCTTAA AACGCCATGAAATTTTGAGTGAATTTTCTGTAGGGAGTTGGGGGCTTGTTAGAGACATTGGCTATCGAAATGGATCTTAC AATAATCCTTATGTGTATGAGCTAAAAGATCAGGCAATTTATAGTAAAAATGAATGTGATTATAGTGGCACTATTGCAGG TAGGGCTGATTGTGCTACAAGTAAAATCAAAGGGCATAATCACTACATCGCTCTGAGAGATAATTTTGCCATAACCAAGT ATTTGGATATTGGTTTGGGTTACCGTTTCGATAAGCATAAATTCCGTAGCACTCATCGCTGGGCAAATCAAGGCGATTAT AAAAATAGTGCGTGGAATATTGGCATAGTCGCAAAACCAACGTCATTCCTATCGCTCTCTTATCGAGCATCATCTGGCTT TAGAGTGCCAAGTTTCCAAGAGCTATTTGGCTTACGTTATGATGGTGCAATGAAAGGCTCCAGCGATGCTTACCAAAAAA CAGAGAAGTTATCTCCTGAAAAATCCTTAAACCAAGAGGTTGCTGCGACTTTCAAAGGTGATTTTGGTGTCGTTGAAGTC AGTTATTTCAAAAATGACTATAAGCAGTTAATTGCTCCAGCAGAAAGAATGCACCAAACTCAATCAATGATTAACTATTT TAATGTGCAAGATATTAAATTGGACGGCATTAATCTTATTGGTAAGCTAGATTGGAATGGGGTATTTGATAAAATTCCTG AGGGCATTTACACAACATTGGCTTATAGCAAAATGCGAGTAAAAGAGGTGAAAAACTATCAAGGGTATATGAATATTCGT TCTCCATTGTTAGATACCATTCAGCCTGCTCGCTATGTTGTAGGAGTGGGGTACGATCAGCCAGATGAAAAATGGGGCGT GAATCTAACAATGACACACTCCAGTGGAAAAAATCCAAATGAGTTAAGAGGTAATGAACAAGTCGGTTTTGCCAATTATG AGCGAACTGCCACGAAGAAAAGAACACGTTCTTGGCATACCTTTGACTTAACGGGATATATCACCCCTTGGAAACATACA ACGGTACGAGCTGGCGTATATAACCTGATGAATTATCGTTACACCACTTGGGAATCCGTACGTCAATCTTCGCTTAATGC AATTCATCAGCATACTAACGTAAAAGACTATGCAAGGTATGCAGCGCCCGGTAGAAATTATGTTGTTTCATTCGAAATGA AATTCTAA
Upstream 100 bases:
>100_bases GGAGAACTTGGCGGACAATTCCATCATAAATCAGACAATGGCAGTGTTGGCGCTGTCTTTGGTGCAAAACGACAAATAGA AAAATAATAAGGAATTTGCT
Downstream 100 bases:
>100_bases TTTAGAGTACCTTAGTTTCTAAAAGGCATAGTAGACAAAAGTGTTGTAAAAAGTGAGCTAGAGCCTTATGGCACAAGGCT TTAAGCCCGCTTTTTGAAAT
Product: transferrin-binding protein 1 Tbp1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 935; Mature: 935
Protein sequence:
>935_residues MKNKLNLISLALLSLFAVQSYAEQAVQLNDVYVTGTKKKAHKKENEVTGLGKVVKTPDTLSKEQVLGIRDLTRYDPGISV VEQGRGATTGYSIRGVDRNRVGLALDGLPQIQSYVSQYSRSSSGAINEIEYENLRSIQISKGASSSEFGSGSLGGSVQFR TKEVSDIIKPGQSWGLDTKSAYSSKNQQWLNSLAFAGTHNGFDALVIYTHRDGKETKAHKNAESRSQNITRVGVETNELD TSNRYTATTNNQHTYGWFLIKDECPTLDCTPKQMARVTKDTPSFRSYPEYTPEEKQAYENQKHITERLNAQDYTGEYRAL PDPLKYKSDSWLVKLGYTFSPKHYVAGTYEHSKQRYDTRDMTYTAYWQPSDLLRTGRNWYPMNNAKGLYRDNALDGVAID YFTEDGVKSSKGLRWAKARFIDEWHTRDRLGALYRYTNQDGNRLIDRLSLSFDQQKINLSTRLRENNCSEYPTIDKNCRA TLDKLWSSTKNEQSSYEEKHDTIQLSLDKTVQTGLGKHQLNMLLGSDRFNSTLKRHEILSEFSVGSWGLVRDIGYRNGSY NNPYVYELKDQAIYSKNECDYSGTIAGRADCATSKIKGHNHYIALRDNFAITKYLDIGLGYRFDKHKFRSTHRWANQGDY KNSAWNIGIVAKPTSFLSLSYRASSGFRVPSFQELFGLRYDGAMKGSSDAYQKTEKLSPEKSLNQEVAATFKGDFGVVEV SYFKNDYKQLIAPAERMHQTQSMINYFNVQDIKLDGINLIGKLDWNGVFDKIPEGIYTTLAYSKMRVKEVKNYQGYMNIR SPLLDTIQPARYVVGVGYDQPDEKWGVNLTMTHSSGKNPNELRGNEQVGFANYERTATKKRTRSWHTFDLTGYITPWKHT TVRAGVYNLMNYRYTTWESVRQSSLNAIHQHTNVKDYARYAAPGRNYVVSFEMKF
Sequences:
>Translated_935_residues MKNKLNLISLALLSLFAVQSYAEQAVQLNDVYVTGTKKKAHKKENEVTGLGKVVKTPDTLSKEQVLGIRDLTRYDPGISV VEQGRGATTGYSIRGVDRNRVGLALDGLPQIQSYVSQYSRSSSGAINEIEYENLRSIQISKGASSSEFGSGSLGGSVQFR TKEVSDIIKPGQSWGLDTKSAYSSKNQQWLNSLAFAGTHNGFDALVIYTHRDGKETKAHKNAESRSQNITRVGVETNELD TSNRYTATTNNQHTYGWFLIKDECPTLDCTPKQMARVTKDTPSFRSYPEYTPEEKQAYENQKHITERLNAQDYTGEYRAL PDPLKYKSDSWLVKLGYTFSPKHYVAGTYEHSKQRYDTRDMTYTAYWQPSDLLRTGRNWYPMNNAKGLYRDNALDGVAID YFTEDGVKSSKGLRWAKARFIDEWHTRDRLGALYRYTNQDGNRLIDRLSLSFDQQKINLSTRLRENNCSEYPTIDKNCRA TLDKLWSSTKNEQSSYEEKHDTIQLSLDKTVQTGLGKHQLNMLLGSDRFNSTLKRHEILSEFSVGSWGLVRDIGYRNGSY NNPYVYELKDQAIYSKNECDYSGTIAGRADCATSKIKGHNHYIALRDNFAITKYLDIGLGYRFDKHKFRSTHRWANQGDY KNSAWNIGIVAKPTSFLSLSYRASSGFRVPSFQELFGLRYDGAMKGSSDAYQKTEKLSPEKSLNQEVAATFKGDFGVVEV SYFKNDYKQLIAPAERMHQTQSMINYFNVQDIKLDGINLIGKLDWNGVFDKIPEGIYTTLAYSKMRVKEVKNYQGYMNIR SPLLDTIQPARYVVGVGYDQPDEKWGVNLTMTHSSGKNPNELRGNEQVGFANYERTATKKRTRSWHTFDLTGYITPWKHT TVRAGVYNLMNYRYTTWESVRQSSLNAIHQHTNVKDYARYAAPGRNYVVSFEMKF >Mature_935_residues MKNKLNLISLALLSLFAVQSYAEQAVQLNDVYVTGTKKKAHKKENEVTGLGKVVKTPDTLSKEQVLGIRDLTRYDPGISV VEQGRGATTGYSIRGVDRNRVGLALDGLPQIQSYVSQYSRSSSGAINEIEYENLRSIQISKGASSSEFGSGSLGGSVQFR TKEVSDIIKPGQSWGLDTKSAYSSKNQQWLNSLAFAGTHNGFDALVIYTHRDGKETKAHKNAESRSQNITRVGVETNELD TSNRYTATTNNQHTYGWFLIKDECPTLDCTPKQMARVTKDTPSFRSYPEYTPEEKQAYENQKHITERLNAQDYTGEYRAL PDPLKYKSDSWLVKLGYTFSPKHYVAGTYEHSKQRYDTRDMTYTAYWQPSDLLRTGRNWYPMNNAKGLYRDNALDGVAID YFTEDGVKSSKGLRWAKARFIDEWHTRDRLGALYRYTNQDGNRLIDRLSLSFDQQKINLSTRLRENNCSEYPTIDKNCRA TLDKLWSSTKNEQSSYEEKHDTIQLSLDKTVQTGLGKHQLNMLLGSDRFNSTLKRHEILSEFSVGSWGLVRDIGYRNGSY NNPYVYELKDQAIYSKNECDYSGTIAGRADCATSKIKGHNHYIALRDNFAITKYLDIGLGYRFDKHKFRSTHRWANQGDY KNSAWNIGIVAKPTSFLSLSYRASSGFRVPSFQELFGLRYDGAMKGSSDAYQKTEKLSPEKSLNQEVAATFKGDFGVVEV SYFKNDYKQLIAPAERMHQTQSMINYFNVQDIKLDGINLIGKLDWNGVFDKIPEGIYTTLAYSKMRVKEVKNYQGYMNIR SPLLDTIQPARYVVGVGYDQPDEKWGVNLTMTHSSGKNPNELRGNEQVGFANYERTATKKRTRSWHTFDLTGYITPWKHT TVRAGVYNLMNYRYTTWESVRQSSLNAIHQHTNVKDYARYAAPGRNYVVSFEMKF
Specific function: Acts as a transferrin receptor and is required for transferrin utilization [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010949 - InterPro: IPR010948 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 106723; Mature: 106723
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNKLNLISLALLSLFAVQSYAEQAVQLNDVYVTGTKKKAHKKENEVTGLGKVVKTPDTL CCCCHHHHHHHHHHHHHHHHHHHHHEEECEEEEECCCHHHHHHHHHHHHCHHHHCCCCCC SKEQVLGIRDLTRYDPGISVVEQGRGATTGYSIRGVDRNRVGLALDGLPQIQSYVSQYSR CHHHHCCHHHHHHCCCCCHHHHCCCCCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHCC SSSGAINEIEYENLRSIQISKGASSSEFGSGSLGGSVQFRTKEVSDIIKPGQSWGLDTKS CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCHH AYSSKNQQWLNSLAFAGTHNGFDALVIYTHRDGKETKAHKNAESRSQNITRVGVETNELD HHCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHCCHHHHHCCEEEECCCCCCCC TSNRYTATTNNQHTYGWFLIKDECPTLDCTPKQMARVTKDTPSFRSYPEYTPEEKQAYEN CCCCEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH QKHITERLNAQDYTGEYRALPDPLKYKSDSWLVKLGYTFSPKHYVAGTYEHSKQRYDTRD HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEECCCCEEECCHHHHHHHCCCCC MTYTAYWQPSDLLRTGRNWYPMNNAKGLYRDNALDGVAIDYFTEDGVKSSKGLRWAKARF CEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHH IDEWHTRDRLGALYRYTNQDGNRLIDRLSLSFDQQKINLSTRLRENNCSEYPTIDKNCRA HHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCHHHCCHHHHHCCCCCCCCCCCCCHHHH TLDKLWSSTKNEQSSYEEKHDTIQLSLDKTVQTGLGKHQLNMLLGSDRFNSTLKRHEILS HHHHHHCCCCCHHHHHHHCCCEEEEEECHHHHHCCCHHHHHHEECCCHHHHHHHHHHHHH EFSVGSWGLVRDIGYRNGSYNNPYVYELKDQAIYSKNECDYSGTIAGRADCATSKIKGHN HCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC HYIALRDNFAITKYLDIGLGYRFDKHKFRSTHRWANQGDYKNSAWNIGIVAKPTSFLSLS CEEEEECCCEEEEEEECCCCCEECHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEE YRASSGFRVPSFQELFGLRYDGAMKGSSDAYQKTEKLSPEKSLNQEVAATFKGDFGVVEV EECCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHCHHHHHHCCCCCCEEEE SYFKNDYKQLIAPAERMHQTQSMINYFNVQDIKLDGINLIGKLDWNGVFDKIPEGIYTTL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCHHHHCCCHHHHHH AYSKMRVKEVKNYQGYMNIRSPLLDTIQPARYVVGVGYDQPDEKWGVNLTMTHSSGKNPN HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHCCEEEEECCCCCCHH ELRGNEQVGFANYERTATKKRTRSWHTFDLTGYITPWKHTTVRAGVYNLMNYRYTTWESV HCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHH RQSSLNAIHQHTNVKDYARYAAPGRNYVVSFEMKF HHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEECC >Mature Secondary Structure MKNKLNLISLALLSLFAVQSYAEQAVQLNDVYVTGTKKKAHKKENEVTGLGKVVKTPDTL CCCCHHHHHHHHHHHHHHHHHHHHHEEECEEEEECCCHHHHHHHHHHHHCHHHHCCCCCC SKEQVLGIRDLTRYDPGISVVEQGRGATTGYSIRGVDRNRVGLALDGLPQIQSYVSQYSR CHHHHCCHHHHHHCCCCCHHHHCCCCCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHCC SSSGAINEIEYENLRSIQISKGASSSEFGSGSLGGSVQFRTKEVSDIIKPGQSWGLDTKS CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCHH AYSSKNQQWLNSLAFAGTHNGFDALVIYTHRDGKETKAHKNAESRSQNITRVGVETNELD HHCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHCCHHHHHCCEEEECCCCCCCC TSNRYTATTNNQHTYGWFLIKDECPTLDCTPKQMARVTKDTPSFRSYPEYTPEEKQAYEN CCCCEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH QKHITERLNAQDYTGEYRALPDPLKYKSDSWLVKLGYTFSPKHYVAGTYEHSKQRYDTRD HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEECCCCEEECCHHHHHHHCCCCC MTYTAYWQPSDLLRTGRNWYPMNNAKGLYRDNALDGVAIDYFTEDGVKSSKGLRWAKARF CEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHH IDEWHTRDRLGALYRYTNQDGNRLIDRLSLSFDQQKINLSTRLRENNCSEYPTIDKNCRA HHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCHHHCCHHHHHCCCCCCCCCCCCCHHHH TLDKLWSSTKNEQSSYEEKHDTIQLSLDKTVQTGLGKHQLNMLLGSDRFNSTLKRHEILS HHHHHHCCCCCHHHHHHHCCCEEEEEECHHHHHCCCHHHHHHEECCCHHHHHHHHHHHHH EFSVGSWGLVRDIGYRNGSYNNPYVYELKDQAIYSKNECDYSGTIAGRADCATSKIKGHN HCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC HYIALRDNFAITKYLDIGLGYRFDKHKFRSTHRWANQGDYKNSAWNIGIVAKPTSFLSLS CEEEEECCCEEEEEEECCCCCEECHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEE YRASSGFRVPSFQELFGLRYDGAMKGSSDAYQKTEKLSPEKSLNQEVAATFKGDFGVVEV EECCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHCHHHHHHCCCCCCEEEE SYFKNDYKQLIAPAERMHQTQSMINYFNVQDIKLDGINLIGKLDWNGVFDKIPEGIYTTL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCHHHHCCCHHHHHH AYSKMRVKEVKNYQGYMNIRSPLLDTIQPARYVVGVGYDQPDEKWGVNLTMTHSSGKNPN HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHCCEEEEECCCCCCHH ELRGNEQVGFANYERTATKKRTRSWHTFDLTGYITPWKHTTVRAGVYNLMNYRYTTWESV HCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHH RQSSLNAIHQHTNVKDYARYAAPGRNYVVSFEMKF HHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]