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The map label for this gene is lyx [H]

Identifier: 126209028

GI number: 126209028

Start: 1790122

End: 1791579

Strand: Reverse

Name: lyx [H]

Synonym: APL_1564

Alternate gene names: 126209028

Gene position: 1791579-1790122 (Counterclockwise)

Preceding gene: 126209029

Following gene: 126209026

Centisome position: 78.77

GC content: 47.19

Gene sequence:

>1458_bases
ATGAACTATACTCTTGGCATTGACTGCGGTGGCACTTTTATTAAAGCCGCACTTTTTGATAATCAAGGCAATATTAAGGC
GTTACATCGAGAAAATATATCGGTAATCAGCGAAACCGCAGGCTATGCTGAGCGTGATATGCAACAACTCTGGCAGGTGT
GTGCCGAGGTAGTACGCCAAACCATTGCAAAAAGCGGAGTAAATCCGACCGCTATCAAAGGGGTAGGAATTTCGGCACAA
GGTAAAGGCGCGTTTTTACTTGATCAGCAAAACCAACCGCTCGGCAGAGCGATTTTGTCTTCCGATCAACGTTCGCTTTC
AATTGTGAAACAGTGGCAGGCGGACGGTATTCCGGAAAAACTTTATCCGATTACCCGCCAGACGTTATGGGCCGGACATC
CTGTTTCGATTTTACGTTGGGTACAAGACAACGAGCCGGAACGTTATGCGCAAATCGGCTCGGTCCTGATGTCGCACGAC
TATTTACGATTCTGTCTAACCGGCGAATTATTTGCCGAAGAAACCAATATTTCCGAAAGTAATCTCTACAATATGGCAAC
CGGCGAATACGACCAGACGCTTGCCGATTTACTCGGTTTACAAAATATTTTAGAAAAGCTACCGCCTGTAATTAAGCCGA
ATCAAATTGCCGGCTATGTTACCGAAGCGGCAGCCAAACTAACCGGATTAGCGGTGGGAACGCCGGTGGTCGGCGGTTTA
TTTGATGTAGTTTCCACTGCACGTTGTGCCGACTTAGATGGCGAAAGCAAACTGAATGCGGTATTAGGCACATGGTCGGT
TGTCAGCGGCATTACCGACAACATCGACCCGACTCAAACCCTGCCGTTTGTCTATGGTCGTTATACGGATGAAGGCAAAT
TTATTGTCCACGAGGCCAGCCCGACTTCCGCCGGCAATTTGGAATGGTTTGTGAAGCAATGGAAATTGGATTATGCGGAA
ATTAATCAACAAGTGGCGAGCTTACCGCCGGCAGCCGGTTCCGTGTTATTTGTGCCGTTTTTATACGGCTCGAATGCCGG
CTTAGGTATGCAAGCGGGCTTCTACGGCTTGCAAGCGCATCATAGTCAAGCGCATTTATTACAGGCGATTTATGAAGGCG
TGCTGTTTAGCCTTATGCACCACCTCAACCGTATGAAGCAACGTTTCCCGAATGCAAACGTATTACGTGTGACCGGCGGA
CCGACCAAATCTCCGATTTGGCTACAAATGCTTGCCGATTTAACCGGTATGCAATTGGAAATTCCGCAAGTGGAAGAAAC
CGGCTGTTTAGGCGCGGCATTAATGGCAATGCAAGGTACCGGCGCAGAGATTTCACAAGTACAAGTATTGAAAACAGAAA
TGTTAAAAGTACAACCGAATCCGGCAAATTTTGCCGCTTACCAACAAAAATATCAGCGTTATCAACAACTCACCGAAGCG
TTAAAAGCGATGCTTTAA

Upstream 100 bases:

>100_bases
CCGACAACGAAGGCAAACCATTTCGTCCTACAAGCGGTTATTTTTTCGAAATTTTTTACAAAAACGGACGAACTTCGTCC
TCATAATTATGGGAAATAAA

Downstream 100 bases:

>100_bases
GCGTAAAAAAAACGGTCGGAATCTGCAAATTTTTTACAAATTCCGACCTTTTTGCTGAACGGTGTAATAGAAAAAATGGT
TGATAATAAATATGTCTAAT

Product: putative L-xylulose kinase

Products: NA

Alternate protein names: L-xylulokinase [H]

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MNYTLGIDCGGTFIKAALFDNQGNIKALHRENISVISETAGYAERDMQQLWQVCAEVVRQTIAKSGVNPTAIKGVGISAQ
GKGAFLLDQQNQPLGRAILSSDQRSLSIVKQWQADGIPEKLYPITRQTLWAGHPVSILRWVQDNEPERYAQIGSVLMSHD
YLRFCLTGELFAEETNISESNLYNMATGEYDQTLADLLGLQNILEKLPPVIKPNQIAGYVTEAAAKLTGLAVGTPVVGGL
FDVVSTARCADLDGESKLNAVLGTWSVVSGITDNIDPTQTLPFVYGRYTDEGKFIVHEASPTSAGNLEWFVKQWKLDYAE
INQQVASLPPAAGSVLFVPFLYGSNAGLGMQAGFYGLQAHHSQAHLLQAIYEGVLFSLMHHLNRMKQRFPNANVLRVTGG
PTKSPIWLQMLADLTGMQLEIPQVEETGCLGAALMAMQGTGAEISQVQVLKTEMLKVQPNPANFAAYQQKYQRYQQLTEA
LKAML

Sequences:

>Translated_485_residues
MNYTLGIDCGGTFIKAALFDNQGNIKALHRENISVISETAGYAERDMQQLWQVCAEVVRQTIAKSGVNPTAIKGVGISAQ
GKGAFLLDQQNQPLGRAILSSDQRSLSIVKQWQADGIPEKLYPITRQTLWAGHPVSILRWVQDNEPERYAQIGSVLMSHD
YLRFCLTGELFAEETNISESNLYNMATGEYDQTLADLLGLQNILEKLPPVIKPNQIAGYVTEAAAKLTGLAVGTPVVGGL
FDVVSTARCADLDGESKLNAVLGTWSVVSGITDNIDPTQTLPFVYGRYTDEGKFIVHEASPTSAGNLEWFVKQWKLDYAE
INQQVASLPPAAGSVLFVPFLYGSNAGLGMQAGFYGLQAHHSQAHLLQAIYEGVLFSLMHHLNRMKQRFPNANVLRVTGG
PTKSPIWLQMLADLTGMQLEIPQVEETGCLGAALMAMQGTGAEISQVQVLKTEMLKVQPNPANFAAYQQKYQRYQQLTEA
LKAML
>Mature_485_residues
MNYTLGIDCGGTFIKAALFDNQGNIKALHRENISVISETAGYAERDMQQLWQVCAEVVRQTIAKSGVNPTAIKGVGISAQ
GKGAFLLDQQNQPLGRAILSSDQRSLSIVKQWQADGIPEKLYPITRQTLWAGHPVSILRWVQDNEPERYAQIGSVLMSHD
YLRFCLTGELFAEETNISESNLYNMATGEYDQTLADLLGLQNILEKLPPVIKPNQIAGYVTEAAAKLTGLAVGTPVVGGL
FDVVSTARCADLDGESKLNAVLGTWSVVSGITDNIDPTQTLPFVYGRYTDEGKFIVHEASPTSAGNLEWFVKQWKLDYAE
INQQVASLPPAAGSVLFVPFLYGSNAGLGMQAGFYGLQAHHSQAHLLQAIYEGVLFSLMHHLNRMKQRFPNANVLRVTGG
PTKSPIWLQMLADLTGMQLEIPQVEETGCLGAALMAMQGTGAEISQVQVLKTEMLKVQPNPANFAAYQQKYQRYQQLTEA
LKAML

Specific function: L-lyxose utilization. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FGGY kinase family [H]

Homologues:

Organism=Escherichia coli, GI1790005, Length=486, Percent_Identity=58.8477366255144, Blast_Score=605, Evalue=1e-174,
Organism=Escherichia coli, GI1789987, Length=492, Percent_Identity=25.8130081300813, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1787789, Length=514, Percent_Identity=24.124513618677, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1790361, Length=449, Percent_Identity=21.1581291759465, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1789168, Length=450, Percent_Identity=22.6666666666667, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1790338, Length=477, Percent_Identity=22.0125786163522, Blast_Score=69, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24656367, Length=508, Percent_Identity=19.6850393700787, Blast_Score=80, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018483
- InterPro:   IPR018484 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.53 [H]

Molecular weight: Translated: 53080; Mature: 53080

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS00445 FGGY_KINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYTLGIDCGGTFIKAALFDNQGNIKALHRENISVISETAGYAERDMQQLWQVCAEVVRQ
CCEEEEECCCCHHEEEEEECCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
TIAKSGVNPTAIKGVGISAQGKGAFLLDQQNQPLGRAILSSDQRSLSIVKQWQADGIPEK
HHHHCCCCCCCEEECCCCCCCCCEEEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCHH
LYPITRQTLWAGHPVSILRWVQDNEPERYAQIGSVLMSHDYLRFCLTGELFAEETNISES
HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
NLYNMATGEYDQTLADLLGLQNILEKLPPVIKPNQIAGYVTEAAAKLTGLAVGTPVVGGL
CCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
FDVVSTARCADLDGESKLNAVLGTWSVVSGITDNIDPTQTLPFVYGRYTDEGKFIVHEAS
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEECC
PTSAGNLEWFVKQWKLDYAEINQQVASLPPAAGSVLFVPFLYGSNAGLGMQAGFYGLQAH
CCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHH
HSQAHLLQAIYEGVLFSLMHHLNRMKQRFPNANVLRVTGGPTKSPIWLQMLADLTGMQLE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEE
IPQVEETGCLGAALMAMQGTGAEISQVQVLKTEMLKVQPNPANFAAYQQKYQRYQQLTEA
CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHH
LKAML
HHHCC
>Mature Secondary Structure
MNYTLGIDCGGTFIKAALFDNQGNIKALHRENISVISETAGYAERDMQQLWQVCAEVVRQ
CCEEEEECCCCHHEEEEEECCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
TIAKSGVNPTAIKGVGISAQGKGAFLLDQQNQPLGRAILSSDQRSLSIVKQWQADGIPEK
HHHHCCCCCCCEEECCCCCCCCCEEEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCHH
LYPITRQTLWAGHPVSILRWVQDNEPERYAQIGSVLMSHDYLRFCLTGELFAEETNISES
HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
NLYNMATGEYDQTLADLLGLQNILEKLPPVIKPNQIAGYVTEAAAKLTGLAVGTPVVGGL
CCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
FDVVSTARCADLDGESKLNAVLGTWSVVSGITDNIDPTQTLPFVYGRYTDEGKFIVHEAS
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEECC
PTSAGNLEWFVKQWKLDYAEINQQVASLPPAAGSVLFVPFLYGSNAGLGMQAGFYGLQAH
CCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHH
HSQAHLLQAIYEGVLFSLMHHLNRMKQRFPNANVLRVTGGPTKSPIWLQMLADLTGMQLE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEE
IPQVEETGCLGAALMAMQGTGAEISQVQVLKTEMLKVQPNPANFAAYQQKYQRYQQLTEA
CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHH
LKAML
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]