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The map label for this gene is ygaU [H]

Identifier: 126208970

GI number: 126208970

Start: 1722708

End: 1723151

Strand: Direct

Name: ygaU [H]

Synonym: APL_1506

Alternate gene names: 126208970

Gene position: 1722708-1723151 (Clockwise)

Preceding gene: 126208965

Following gene: 126208971

Centisome position: 75.74

GC content: 42.79

Gene sequence:

>444_bases
ATGGGTTTATTTGATTTTGCAGCCAATATCGGCAAAAAACTTTTCAATAAAGAAGAAGAAGCGTCACAAGCGGTAACCGA
ACACTTAAACGAAGATAATCCGGGTGTCGAGAACGTTCAAGTTACCGTTGAAAACGGTGTGGCGAACTTAACCGGTATTG
CGGCTACGGCGGCAGCGGTAGAAAAAGCGGTATTAATGGCAGGTAACATCGAAGGTATTTCGGAAGTGAAAATCGACGGT
GTTCAAATTGCGAACGGCGAAGCGCTTGCCGGTGACGATGAGTTCTACGTAATTCAAAAAGGCGACACTTTATGGGAAAT
CGCAACCAAAGCGTACGGTAACGGTGCAAAATATAAAGCGATCGTTGAAGCGAACAAAGAAGTAATCAAAGACGAAAATA
AAATCTTCCCGGGTCAAAAAATCCGTATTCCTAAAGGTTTATAA

Upstream 100 bases:

>100_bases
TTTTTCCGCCGTTAATCTAACGCAGCGACCGGCTATTTCAATCACGTTAGAATGATGTAGAATATAGTCTCCCTTAAACC
TAACTTTAGATGACTTTACC

Downstream 100 bases:

>100_bases
TCGTTAAAGTCGGAAAGACAAAACAAACGATATTAATTGCAAAAAATCAGTAAGATTTAACCGCTTAACGGCTAAATTTT
GCTGATTTTTTTAATTATTT

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MGLFDFAANIGKKLFNKEEEASQAVTEHLNEDNPGVENVQVTVENGVANLTGIAATAAAVEKAVLMAGNIEGISEVKIDG
VQIANGEALAGDDEFYVIQKGDTLWEIATKAYGNGAKYKAIVEANKEVIKDENKIFPGQKIRIPKGL

Sequences:

>Translated_147_residues
MGLFDFAANIGKKLFNKEEEASQAVTEHLNEDNPGVENVQVTVENGVANLTGIAATAAAVEKAVLMAGNIEGISEVKIDG
VQIANGEALAGDDEFYVIQKGDTLWEIATKAYGNGAKYKAIVEANKEVIKDENKIFPGQKIRIPKGL
>Mature_146_residues
GLFDFAANIGKKLFNKEEEASQAVTEHLNEDNPGVENVQVTVENGVANLTGIAATAAAVEKAVLMAGNIEGISEVKIDGV
QIANGEALAGDDEFYVIQKGDTLWEIATKAYGNGAKYKAIVEANKEVIKDENKIFPGQKIRIPKGL

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=151, Percent_Identity=37.7483443708609, Blast_Score=97, Evalue=5e-22,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 15676; Mature: 15545

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFDFAANIGKKLFNKEEEASQAVTEHLNEDNPGVENVQVTVENGVANLTGIAATAAAV
CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
EKAVLMAGNIEGISEVKIDGVQIANGEALAGDDEFYVIQKGDTLWEIATKAYGNGAKYKA
HHHHHEECCCCCCCEEEECCEEEECCCEECCCCCEEEEECCCCHHHHHHHHCCCCCCEEE
IVEANKEVIKDENKIFPGQKIRIPKGL
EECCCHHHHCCCCCCCCCCEEECCCCC
>Mature Secondary Structure 
GLFDFAANIGKKLFNKEEEASQAVTEHLNEDNPGVENVQVTVENGVANLTGIAATAAAV
CHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
EKAVLMAGNIEGISEVKIDGVQIANGEALAGDDEFYVIQKGDTLWEIATKAYGNGAKYKA
HHHHHEECCCCCCCEEEECCEEEECCCEECCCCCEEEEECCCCHHHHHHHHCCCCCCEEE
IVEANKEVIKDENKIFPGQKIRIPKGL
EECCCHHHHCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]