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The map label for this gene is yccS [C]

Identifier: 126208961

GI number: 126208961

Start: 1712026

End: 1714200

Strand: Reverse

Name: yccS [C]

Synonym: APL_1497

Alternate gene names: 126208961

Gene position: 1714200-1712026 (Counterclockwise)

Preceding gene: 126208962

Following gene: 126208957

Centisome position: 75.37

GC content: 43.86

Gene sequence:

>2175_bases
ATGAAAAACTTCCTAAAAACATTCCGATTCGATTGGTTATCGGAAAATATGATTAAAACGCTACCGATCTTTATTTCAAT
TAATCTGGTTTCGCTCGTCGTGTGGCAACTGCAAATGTCACATTTGGCGATGTCGCTGATATTAGGGGTTATCGCCGGCG
GTTTGGTGGATTTGGATAATAGCCCGACCGGCAGAATTAAAAATCTGGTATTAAGTTTACTTGCCTTTGTCGTTTCATCG
TTAGGCGCACAATTTTCACTCAGTTTCGGTTGGCTGTTTTTACCGGCGGCAATGTTAAGTACCTTTATTTTAGTGATGCT
CGGTGCAATCGGACAACGCTACAGTACGATTGCGTTCGGTTCGTTAATCGTTGCGGTTTACACCAGTTTGGTCTATACCC
CGGAAAGTATTTGGTACGGCAATATGTTGATGATCTTGTCCGGCGCATTAATTTACGGGGTGGTGGCGTTAATCGTGCAT
TTATGTTTCCCAAATCGTATCGTTCAGGAAAACTTAGCCAAAGCCTACGATGCGTTAGGCGCCTATTTACAAGCCAAATC
GGAATATTTCGACCCCGATGACGATGATCTCGCCGCCAAACAGCTTGCTTTAGCCAAAGCGAACCAGCAAATTATCCAAA
CTTTCGACCAAACGCGGATTTCGTTGTTTTATCGCTTGCAAGGGCGTAACCGCCATAGCCGTACCCATCATTTGCTTCGT
TATTATTTTACCGCACAGGATATTTGGGAGCGGGCAAGTTCCAGCCATTATCAATATCACGAATTGTTTCAACAATTAAA
TAACAGCGATTTGATGTTCCGTTTCCAACGTGTAATGGAATTACAGGCGATTGCCTGCCAGCGAGTTGCTTCGGCATTAC
GTCACGGCGAAAGCTATCAGCATAGCGCAAGAGGAGAAAAAGCCTTACAAGGGTTACTTAACTCGCTGCATTTCCATAGC
GAACGGGGCTTAAAATCCGCTCATCGTTGGCAATCTATTGCGGAAAACCTACGGAATATCGAAGGGCAATTAAACCAAAT
CGAACAAGAAAACGGTGTGGACGACTTACGTAAAGACGTGGTGAAATCCACCCGCCTGATTGCGGAGAATGTATCCGGTC
TCAGAAATATGCTTAACGCGATTCGTAGCCAATGTACGCTGTCTTCACAACTATTCCGCCATGCGATTCGCTTATCTATC
GTGGTGTTCGCCTGCAGTTTAGTCGTGCAATTATTAAATTTGGATAGTAAAGGCTATTGGATTTTACTGACCGCCGTATT
TGTCTGCCAACCGAATTATGCCGCAACCAAAAAACGGTTGGTTCAGCGAATTATCGGTACGGTATTAGGCGTATTTGTCG
GCTTCCTGTTCCAATATTTTGCGCCGAGTTTAGAAGCGCAGCTCGGACTTATCAGCATTACCGGCAGCTTATATTACTTC
TTCCGCATCAGTAATTACGGTTTCTCAACCTTCTTTATTACATTACTGGTGTTTGTAAGTTTAGACGTTTCCGGTTTAGG
GGCGGAAAACGCTCTATTACCGCGTTTATTCGATACTCTCATCGGCACGGCATTAGCGTGGTTTGCGGTTTCGTTTATTT
ATCCGGACTGGAAATACCTCAATCTGCATCGCAATTTACAAAGCACACTTGTCGCCAGCGGACAATATTTACGCCATATT
TTGGCGCAATTGCAATTCGGTTATAACGACCAATTAGCCTATCGTGTCGCCCGCCGTGACGTACATAATAATATTTCGGC
ATTAAGTGCGGCGATTTCTAATATGCACGGCGAACCGAAAAAATATCGAGAAGTGCTGGACTTTGCGCCGAAACTATTAG
GCGTAACCTATACGTTGCTCGGTTATATTTCGGCATTAGGCGCATATCGAGTGGAAAGTTCGGAATTAAGTCATAATATT
GATTTTTCGGCGATATTTTTCAGTAAGGGAAAACAGGTGGTCGATATATTAGATGCGATCACACAGATGAAAGATAGCGA
ATCCGTTCCTCTGCAACTCAGTGAAATCGATACGGCTCTCAATCACTTTGAACAGACCTATCAAGACGGCGGCGATAAGC
TCGCTCTGGTATTGGTTCAACAACTACGTATGATTACTCAGTTGTTACCGCAATTACAACGCTTGGTGAATAAAGAACAA
CTTTATCGGGAATAA

Upstream 100 bases:

>100_bases
CGCCGAACGTTTAGCTTAAACGTTCGTTTTGCTCTTGTTCAAGCGGTCGGATTTGCTTTAAAATTTGTAAAAATTTAGCC
GAATTCGACCGCTTCCTATC

Downstream 100 bases:

>100_bases
CACTCAAACAAGCGGTCGAATTCAGCGAAAAAATGACAAAATATTCGTTAAATTCGACCGCTTCCTTTTATCTCAACGAA
GAAAGAGCGGCGCGATATTC

Product: putative integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 724; Mature: 724

Protein sequence:

>724_residues
MKNFLKTFRFDWLSENMIKTLPIFISINLVSLVVWQLQMSHLAMSLILGVIAGGLVDLDNSPTGRIKNLVLSLLAFVVSS
LGAQFSLSFGWLFLPAAMLSTFILVMLGAIGQRYSTIAFGSLIVAVYTSLVYTPESIWYGNMLMILSGALIYGVVALIVH
LCFPNRIVQENLAKAYDALGAYLQAKSEYFDPDDDDLAAKQLALAKANQQIIQTFDQTRISLFYRLQGRNRHSRTHHLLR
YYFTAQDIWERASSSHYQYHELFQQLNNSDLMFRFQRVMELQAIACQRVASALRHGESYQHSARGEKALQGLLNSLHFHS
ERGLKSAHRWQSIAENLRNIEGQLNQIEQENGVDDLRKDVVKSTRLIAENVSGLRNMLNAIRSQCTLSSQLFRHAIRLSI
VVFACSLVVQLLNLDSKGYWILLTAVFVCQPNYAATKKRLVQRIIGTVLGVFVGFLFQYFAPSLEAQLGLISITGSLYYF
FRISNYGFSTFFITLLVFVSLDVSGLGAENALLPRLFDTLIGTALAWFAVSFIYPDWKYLNLHRNLQSTLVASGQYLRHI
LAQLQFGYNDQLAYRVARRDVHNNISALSAAISNMHGEPKKYREVLDFAPKLLGVTYTLLGYISALGAYRVESSELSHNI
DFSAIFFSKGKQVVDILDAITQMKDSESVPLQLSEIDTALNHFEQTYQDGGDKLALVLVQQLRMITQLLPQLQRLVNKEQ
LYRE

Sequences:

>Translated_724_residues
MKNFLKTFRFDWLSENMIKTLPIFISINLVSLVVWQLQMSHLAMSLILGVIAGGLVDLDNSPTGRIKNLVLSLLAFVVSS
LGAQFSLSFGWLFLPAAMLSTFILVMLGAIGQRYSTIAFGSLIVAVYTSLVYTPESIWYGNMLMILSGALIYGVVALIVH
LCFPNRIVQENLAKAYDALGAYLQAKSEYFDPDDDDLAAKQLALAKANQQIIQTFDQTRISLFYRLQGRNRHSRTHHLLR
YYFTAQDIWERASSSHYQYHELFQQLNNSDLMFRFQRVMELQAIACQRVASALRHGESYQHSARGEKALQGLLNSLHFHS
ERGLKSAHRWQSIAENLRNIEGQLNQIEQENGVDDLRKDVVKSTRLIAENVSGLRNMLNAIRSQCTLSSQLFRHAIRLSI
VVFACSLVVQLLNLDSKGYWILLTAVFVCQPNYAATKKRLVQRIIGTVLGVFVGFLFQYFAPSLEAQLGLISITGSLYYF
FRISNYGFSTFFITLLVFVSLDVSGLGAENALLPRLFDTLIGTALAWFAVSFIYPDWKYLNLHRNLQSTLVASGQYLRHI
LAQLQFGYNDQLAYRVARRDVHNNISALSAAISNMHGEPKKYREVLDFAPKLLGVTYTLLGYISALGAYRVESSELSHNI
DFSAIFFSKGKQVVDILDAITQMKDSESVPLQLSEIDTALNHFEQTYQDGGDKLALVLVQQLRMITQLLPQLQRLVNKEQ
LYRE
>Mature_724_residues
MKNFLKTFRFDWLSENMIKTLPIFISINLVSLVVWQLQMSHLAMSLILGVIAGGLVDLDNSPTGRIKNLVLSLLAFVVSS
LGAQFSLSFGWLFLPAAMLSTFILVMLGAIGQRYSTIAFGSLIVAVYTSLVYTPESIWYGNMLMILSGALIYGVVALIVH
LCFPNRIVQENLAKAYDALGAYLQAKSEYFDPDDDDLAAKQLALAKANQQIIQTFDQTRISLFYRLQGRNRHSRTHHLLR
YYFTAQDIWERASSSHYQYHELFQQLNNSDLMFRFQRVMELQAIACQRVASALRHGESYQHSARGEKALQGLLNSLHFHS
ERGLKSAHRWQSIAENLRNIEGQLNQIEQENGVDDLRKDVVKSTRLIAENVSGLRNMLNAIRSQCTLSSQLFRHAIRLSI
VVFACSLVVQLLNLDSKGYWILLTAVFVCQPNYAATKKRLVQRIIGTVLGVFVGFLFQYFAPSLEAQLGLISITGSLYYF
FRISNYGFSTFFITLLVFVSLDVSGLGAENALLPRLFDTLIGTALAWFAVSFIYPDWKYLNLHRNLQSTLVASGQYLRHI
LAQLQFGYNDQLAYRVARRDVHNNISALSAAISNMHGEPKKYREVLDFAPKLLGVTYTLLGYISALGAYRVESSELSHNI
DFSAIFFSKGKQVVDILDAITQMKDSESVPLQLSEIDTALNHFEQTYQDGGDKLALVLVQQLRMITQLLPQLQRLVNKEQ
LYRE

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=698, Percent_Identity=39.8280802292264, Blast_Score=461, Evalue=1e-131,
Organism=Escherichia coli, GI87082248, Length=553, Percent_Identity=26.4014466546112, Blast_Score=105, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81913; Mature: 81913

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNFLKTFRFDWLSENMIKTLPIFISINLVSLVVWQLQMSHLAMSLILGVIAGGLVDLDN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC
SPTGRIKNLVLSLLAFVVSSLGAQFSLSFGWLFLPAAMLSTFILVMLGAIGQRYSTIAFG
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIVAVYTSLVYTPESIWYGNMLMILSGALIYGVVALIVHLCFPNRIVQENLAKAYDALG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AYLQAKSEYFDPDDDDLAAKQLALAKANQQIIQTFDQTRISLFYRLQGRNRHSRTHHLLR
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHH
YYFTAQDIWERASSSHYQYHELFQQLNNSDLMFRFQRVMELQAIACQRVASALRHGESYQ
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
HSARGEKALQGLLNSLHFHSERGLKSAHRWQSIAENLRNIEGQLNQIEQENGVDDLRKDV
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
VKSTRLIAENVSGLRNMLNAIRSQCTLSSQLFRHAIRLSIVVFACSLVVQLLNLDSKGYW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
ILLTAVFVCQPNYAATKKRLVQRIIGTVLGVFVGFLFQYFAPSLEAQLGLISITGSLYYF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEECCCEEEE
FRISNYGFSTFFITLLVFVSLDVSGLGAENALLPRLFDTLIGTALAWFAVSFIYPDWKYL
EEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
NLHRNLQSTLVASGQYLRHILAQLQFGYNDQLAYRVARRDVHNNISALSAAISNMHGEPK
HHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
KYREVLDFAPKLLGVTYTLLGYISALGAYRVESSELSHNIDFSAIFFSKGKQVVDILDAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEHHCCHHHHHHHHHH
TQMKDSESVPLQLSEIDTALNHFEQTYQDGGDKLALVLVQQLRMITQLLPQLQRLVNKEQ
HHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
LYRE
HHCC
>Mature Secondary Structure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HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]