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The map label for this gene is rfbD [H]

Identifier: 126208931

GI number: 126208931

Start: 1679666

End: 1680814

Strand: Direct

Name: rfbD [H]

Synonym: APL_1467

Alternate gene names: 126208931

Gene position: 1679666-1680814 (Clockwise)

Preceding gene: 126208930

Following gene: 126208932

Centisome position: 73.85

GC content: 38.99

Gene sequence:

>1149_bases
ATGAAATTTCTCCTAGTCGGCGCAGGCTTTTCAAATGCAGTTATTGCTCATGAACTTGCAGAACAAGGTTATCAAGTAAC
CGTTATTGACCAGCGTAATCATGTGGCGGGAAACTGCCACTCTGAACGTGATGCCGAAACGAATGTGATGGTTCACGTTT
ATGGGCCGCATATTTTCCATACCGATAATGAACGTGTGTGGAATTATGTTAATCAATTCGGTGAATGGATGCCGTTTGTC
AATCGTGTGAAAACGATTAGTCAAGGGGCGGTATATTCGTTACCGATTAATTTGCATACGATTAACCAGTTCTTTGGTAA
AACGTGTTCACCGAATGAAGCAAAATCGTTAATTGAAAGTCAAGCGGATATGTCGATTACCGATCCGCAAACGTTTGAAG
AACAAGCGATGCGTTTTGTCGGTCGTGATTTATATAAAGCGTTCTTCTACGGTTATACTAAAAAACAATGGGGTGTAGAG
CCGAAAGAATTACCGGCAAGTATTTTAAAACGTTTACCGGTGCGTTTTAACTATGACGATAATTATTTTGCGCATAAATT
CCAAGGTATGCCGAAAGACGGTTATACCGTTATCGTGGAAAATATGTTAAAACACGATAATATCGAAGTACGTTTAACGA
CACCATTTACTGAAAGTATGAAAGCGGAATTCGATCATATTTTCTGGTCTGGCCCGTTAGATGCTTATTTTGGGTTTGAG
CTAGGCCGTCTAGGTTATCGTACGTTAGATTTTGAAGCGTTCCGTACTGAAGGCGATTTCCAAGGTAATGCGGTCATCAA
TTATGGCGATGAAGAGGTACCGTATACGCGTATTTCGGAACATAAACATTTCGCTCCGTGGGAAAATCACGAGAAAACGA
TTTGCTATCGAGAATTTAGCCGTTTATGCGAAGAAAAGGATATTCCATACTATCCTATTCGTTTAGTGAAAGATAAAGCC
TTATTGCAACAGTATGTTGAAAAAGCAAACAAAGAAACGCAAGTAACTTTTGTCGGACGTTTAGGTACATATCGCTATTT
AGATATGGATGTGACCATTAAGGAAGCATTAGAAACCGTTGATGAGATTAAACAATCATTAGCGAGTAATAAGAATTTAA
AACCGTTCTATGTAAATATGGATGTGTAA

Upstream 100 bases:

>100_bases
TATCCAAAACTTTTTTATTTAGCGTTCTATCTGCGACATAATTTTAATAAAGTATATAAACTTTTAAATAAAGTTCGAGA
ATTGGTTTATAAAATATAAT

Downstream 100 bases:

>100_bases
AATTCTTTAGAAAATAGACCGCTTGTAATAATTATTATAAGCGGTTTTTATTGGAGAATGCGATGTTAGAAAAAATTGAG
CGTTTGATTGATGAAATAAA

Product: putative UDP-galactopyranose mutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKFLLVGAGFSNAVIAHELAEQGYQVTVIDQRNHVAGNCHSERDAETNVMVHVYGPHIFHTDNERVWNYVNQFGEWMPFV
NRVKTISQGAVYSLPINLHTINQFFGKTCSPNEAKSLIESQADMSITDPQTFEEQAMRFVGRDLYKAFFYGYTKKQWGVE
PKELPASILKRLPVRFNYDDNYFAHKFQGMPKDGYTVIVENMLKHDNIEVRLTTPFTESMKAEFDHIFWSGPLDAYFGFE
LGRLGYRTLDFEAFRTEGDFQGNAVINYGDEEVPYTRISEHKHFAPWENHEKTICYREFSRLCEEKDIPYYPIRLVKDKA
LLQQYVEKANKETQVTFVGRLGTYRYLDMDVTIKEALETVDEIKQSLASNKNLKPFYVNMDV

Sequences:

>Translated_382_residues
MKFLLVGAGFSNAVIAHELAEQGYQVTVIDQRNHVAGNCHSERDAETNVMVHVYGPHIFHTDNERVWNYVNQFGEWMPFV
NRVKTISQGAVYSLPINLHTINQFFGKTCSPNEAKSLIESQADMSITDPQTFEEQAMRFVGRDLYKAFFYGYTKKQWGVE
PKELPASILKRLPVRFNYDDNYFAHKFQGMPKDGYTVIVENMLKHDNIEVRLTTPFTESMKAEFDHIFWSGPLDAYFGFE
LGRLGYRTLDFEAFRTEGDFQGNAVINYGDEEVPYTRISEHKHFAPWENHEKTICYREFSRLCEEKDIPYYPIRLVKDKA
LLQQYVEKANKETQVTFVGRLGTYRYLDMDVTIKEALETVDEIKQSLASNKNLKPFYVNMDV
>Mature_382_residues
MKFLLVGAGFSNAVIAHELAEQGYQVTVIDQRNHVAGNCHSERDAETNVMVHVYGPHIFHTDNERVWNYVNQFGEWMPFV
NRVKTISQGAVYSLPINLHTINQFFGKTCSPNEAKSLIESQADMSITDPQTFEEQAMRFVGRDLYKAFFYGYTKKQWGVE
PKELPASILKRLPVRFNYDDNYFAHKFQGMPKDGYTVIVENMLKHDNIEVRLTTPFTESMKAEFDHIFWSGPLDAYFGFE
LGRLGYRTLDFEAFRTEGDFQGNAVINYGDEEVPYTRISEHKHFAPWENHEKTICYREFSRLCEEKDIPYYPIRLVKDKA
LLQQYVEKANKETQVTFVGRLGTYRYLDMDVTIKEALETVDEIKQSLASNKNLKPFYVNMDV

Specific function: Involved in the conversion of UDP-GalP into UDP-GalF through a 2-keto intermediate [H]

COG id: COG0562

COG function: function code M; UDP-galactopyranose mutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788348, Length=366, Percent_Identity=42.6229508196721, Blast_Score=291, Evalue=7e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR016040
- InterPro:   IPR004379
- InterPro:   IPR015899 [H]

Pfam domain/function: PF01266 DAO; PF03275 GLF [H]

EC number: =5.4.99.9 [H]

Molecular weight: Translated: 44464; Mature: 44464

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLLVGAGFSNAVIAHELAEQGYQVTVIDQRNHVAGNCHSERDAETNVMVHVYGPHIFH
CEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCEEEE
TDNERVWNYVNQFGEWMPFVNRVKTISQGAVYSLPINLHTINQFFGKTCSPNEAKSLIES
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHHHHH
QADMSITDPQTFEEQAMRFVGRDLYKAFFYGYTKKQWGVEPKELPASILKRLPVRFNYDD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHCCCEECCCC
NYFAHKFQGMPKDGYTVIVENMLKHDNIEVRLTTPFTESMKAEFDHIFWSGPLDAYFGFE
CCHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHEEECCCCHHHHCCH
LGRLGYRTLDFEAFRTEGDFQGNAVINYGDEEVPYTRISEHKHFAPWENHEKTICYREFS
HHCCCCEEECHHEEECCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
RLCEEKDIPYYPIRLVKDKALLQQYVEKANKETQVTFVGRLGTYRYLDMDVTIKEALETV
HHHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEHHHHHHHH
DEIKQSLASNKNLKPFYVNMDV
HHHHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure
MKFLLVGAGFSNAVIAHELAEQGYQVTVIDQRNHVAGNCHSERDAETNVMVHVYGPHIFH
CEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCEEEE
TDNERVWNYVNQFGEWMPFVNRVKTISQGAVYSLPINLHTINQFFGKTCSPNEAKSLIES
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHHHHH
QADMSITDPQTFEEQAMRFVGRDLYKAFFYGYTKKQWGVEPKELPASILKRLPVRFNYDD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHCCCEECCCC
NYFAHKFQGMPKDGYTVIVENMLKHDNIEVRLTTPFTESMKAEFDHIFWSGPLDAYFGFE
CCHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHEEECCCCHHHHCCH
LGRLGYRTLDFEAFRTEGDFQGNAVINYGDEEVPYTRISEHKHFAPWENHEKTICYREFS
HHCCCCEEECHHEEECCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHH
RLCEEKDIPYYPIRLVKDKALLQQYVEKANKETQVTFVGRLGTYRYLDMDVTIKEALETV
HHHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEHHHHHHHH
DEIKQSLASNKNLKPFYVNMDV
HHHHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7559323 [H]