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The map label for this gene is yceD [C]

Identifier: 126208851

GI number: 126208851

Start: 1587189

End: 1587716

Strand: Reverse

Name: yceD [C]

Synonym: APL_1387

Alternate gene names: 126208851

Gene position: 1587716-1587189 (Counterclockwise)

Preceding gene: 126208861

Following gene: 126208850

Centisome position: 69.81

GC content: 42.8

Gene sequence:

>528_bases
ATGCAAAAGGTAAAACTACCCCTCACTATTGACCCATATAAAGACGCTCAGCGTCGAATGGATTACGAAGGCTACATCTC
ACGTAGTCTGCTTAATCGTTTGGGTGAATCTGTGAGCAATGTGCTAAGCGATGCACAAGTTACTCTCTCGTTATATATCG
ATCCGCAACGCTTAACCGTTATTAAAGGTACGGCGACAGTGGAAGTGGAATTCGATTGCCAACGATGCGGTAACCCGTTT
ACACAAACGCTTGACTGTTCGTTTTGTTTCAGTCCGGTGTCCAACAATATGGATCAGGCGGACAATTTGCCCGAAATTTA
TGAACCAATCGAAGTAAACGAGTTCGGTGAAGTAAATTTACTAGATATGATCGAAGATGGATTTATCATCGAATTGCCTC
TAGTCCCGATGCATAGTGAAGAACACTGTGAAGTGTCCGTGAGTGAACAGGTGTTTGGCGAATTGCCTGAAGAATTGGCG
AAAAAACCTAACCCGTTCGCTGTATTAGCTAATTTAAAGAAAAACTAG

Upstream 100 bases:

>100_bases
CAAACCGGTTCGGTTTATTTAGTTTAGCTTATGAGATATTTTTTAAAAATCCGATTTTCTCTTTGACTATTTTGCTTTCT
ATCTGTAATATGCACACCCT

Downstream 100 bases:

>100_bases
ATCTAGGAGTATAGCCAATGGCTGTTCAACAAAATAAAAAATCTCGTTCACGTCGTGATATGCGTCGTTCACATGATGCA
TTAACAACAGCAGCAGTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MQKVKLPLTIDPYKDAQRRMDYEGYISRSLLNRLGESVSNVLSDAQVTLSLYIDPQRLTVIKGTATVEVEFDCQRCGNPF
TQTLDCSFCFSPVSNNMDQADNLPEIYEPIEVNEFGEVNLLDMIEDGFIIELPLVPMHSEEHCEVSVSEQVFGELPEELA
KKPNPFAVLANLKKN

Sequences:

>Translated_175_residues
MQKVKLPLTIDPYKDAQRRMDYEGYISRSLLNRLGESVSNVLSDAQVTLSLYIDPQRLTVIKGTATVEVEFDCQRCGNPF
TQTLDCSFCFSPVSNNMDQADNLPEIYEPIEVNEFGEVNLLDMIEDGFIIELPLVPMHSEEHCEVSVSEQVFGELPEELA
KKPNPFAVLANLKKN
>Mature_175_residues
MQKVKLPLTIDPYKDAQRRMDYEGYISRSLLNRLGESVSNVLSDAQVTLSLYIDPQRLTVIKGTATVEVEFDCQRCGNPF
TQTLDCSFCFSPVSNNMDQADNLPEIYEPIEVNEFGEVNLLDMIEDGFIIELPLVPMHSEEHCEVSVSEQVFGELPEELA
KKPNPFAVLANLKKN

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yceD [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=175, Percent_Identity=57.7142857142857, Blast_Score=210, Evalue=4e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 19761; Mature: 19761

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVKLPLTIDPYKDAQRRMDYEGYISRSLLNRLGESVSNVLSDAQVTLSLYIDPQRLTV
CCCEECCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEE
IKGTATVEVEFDCQRCGNPFTQTLDCSFCFSPVSNNMDQADNLPEIYEPIEVNEFGEVNL
EECCEEEEEEECHHHCCCCCCCEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCH
LDMIEDGFIIELPLVPMHSEEHCEVSVSEQVFGELPEELAKKPNPFAVLANLKKN
HHHHCCCCEEEECCCCCCCCCCCEEEHHHHHHHHCHHHHHHCCCCEEEEEECCCC
>Mature Secondary Structure
MQKVKLPLTIDPYKDAQRRMDYEGYISRSLLNRLGESVSNVLSDAQVTLSLYIDPQRLTV
CCCEECCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEE
IKGTATVEVEFDCQRCGNPFTQTLDCSFCFSPVSNNMDQADNLPEIYEPIEVNEFGEVNL
EECCEEEEEEECHHHCCCCCCCEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCH
LDMIEDGFIIELPLVPMHSEEHCEVSVSEQVFGELPEELAKKPNPFAVLANLKKN
HHHHCCCCEEEECCCCCCCCCCCEEEHHHHHHHHCHHHHHHCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]