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The map label for this gene is yjjV [C]

Identifier: 126208708

GI number: 126208708

Start: 1429516

End: 1430310

Strand: Direct

Name: yjjV [C]

Synonym: APL_1242

Alternate gene names: 126208708

Gene position: 1429516-1430310 (Clockwise)

Preceding gene: 126208707

Following gene: 126208710

Centisome position: 62.85

GC content: 42.26

Gene sequence:

>795_bases
ATGCAATTCTTTGATACCCATACTCATTTGGATTATGTTTCGGAAAGCCTCAATCTTTCCATTCCCCAACTTGTTGAAAA
TGCCGAACATTCGAATGTAAAACGTATTTTGATTGTGTCCGTATTTGCAGAAAATTTCGCAAAAGTGACCGCTTGCGCCA
AGCAAATGCCTAATAACTTAGTGTACGGTTTAGGGCTTCACCCGCTTTATATTCAACAGCACCAAACCGAGCATTTAGAT
AATTTGGAAAGGTTATTAGCCCGACAAGATCCGCAATGTACTGCGCTTGCGGAAATCGGTTTGGAAAGAGCGGTGGAATC
GCTATGTACTCCTGATCTTTGGCAAAAACAATGTGAGTTTTTAGAAGCGCAACTTGCCTTCGCTAAGCGGTTTAATTTAC
CGGTAAATCTACATTCTCGCCGAAGTCATGATCAGCTTTCCGTCTTTCTAAAAAAAGCGAAATTAACCAATACCGGCGTT
ATTCACGGTTTTGCGGGAAGCTACGAGCAAGCGAAACGCTTTGTCGATTTAGGTTATAAGATTGGGGTTGGCGGCACTAT
TACTTATGCAAGAGCGAATAAAACCAGAGAAGCGATTCGTAAGCTACCTTTAGAAAGTTTATTGTTGGAAACCGATTCGC
CCGATATGCCGGTATTCGGCTTTCAAGGAGAACCTAATCGTCCGGAATGCTTGGCAGTCAGTTTTCAAACGCTTTGCGAA
TTACGGAATGAATCGCCAGCGGTGATTGCGGAAACAATTTGGAACACCGGCGAACAATTATTTTGGTATAAATAA

Upstream 100 bases:

>100_bases
GCGAGCGTGACGAAGATGCTTATGCAGCAAACTAATCTTGATTAAAACGTTAAAAGCGAGGAAAATTTCCTCGCTTTTTT
ATTTTTAACCATTCTATTAT

Downstream 100 bases:

>100_bases
AAAACGGATACCTTAGTATCCGCTTTTCAAATGATATAGCCTACAGACTAGCGCACACTTAGCGCATTGTTACAAACTCT
TCCGAACCGGTCGGATGAAT

Product: putative deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MQFFDTHTHLDYVSESLNLSIPQLVENAEHSNVKRILIVSVFAENFAKVTACAKQMPNNLVYGLGLHPLYIQQHQTEHLD
NLERLLARQDPQCTALAEIGLERAVESLCTPDLWQKQCEFLEAQLAFAKRFNLPVNLHSRRSHDQLSVFLKKAKLTNTGV
IHGFAGSYEQAKRFVDLGYKIGVGGTITYARANKTREAIRKLPLESLLLETDSPDMPVFGFQGEPNRPECLAVSFQTLCE
LRNESPAVIAETIWNTGEQLFWYK

Sequences:

>Translated_264_residues
MQFFDTHTHLDYVSESLNLSIPQLVENAEHSNVKRILIVSVFAENFAKVTACAKQMPNNLVYGLGLHPLYIQQHQTEHLD
NLERLLARQDPQCTALAEIGLERAVESLCTPDLWQKQCEFLEAQLAFAKRFNLPVNLHSRRSHDQLSVFLKKAKLTNTGV
IHGFAGSYEQAKRFVDLGYKIGVGGTITYARANKTREAIRKLPLESLLLETDSPDMPVFGFQGEPNRPECLAVSFQTLCE
LRNESPAVIAETIWNTGEQLFWYK
>Mature_264_residues
MQFFDTHTHLDYVSESLNLSIPQLVENAEHSNVKRILIVSVFAENFAKVTACAKQMPNNLVYGLGLHPLYIQQHQTEHLD
NLERLLARQDPQCTALAEIGLERAVESLCTPDLWQKQCEFLEAQLAFAKRFNLPVNLHSRRSHDQLSVFLKKAKLTNTGV
IHGFAGSYEQAKRFVDLGYKIGVGGTITYARANKTREAIRKLPLESLLLETDSPDMPVFGFQGEPNRPECLAVSFQTLCE
LRNESPAVIAETIWNTGEQLFWYK

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=228, Percent_Identity=28.0701754385965, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI225903439, Length=226, Percent_Identity=24.3362831858407, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI110349730, Length=266, Percent_Identity=24.812030075188, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI14042943, Length=226, Percent_Identity=24.3362831858407, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=24.812030075188, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI226061853, Length=271, Percent_Identity=24.3542435424354, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87082439, Length=260, Percent_Identity=47.6923076923077, Blast_Score=231, Evalue=4e-62,
Organism=Escherichia coli, GI1787342, Length=263, Percent_Identity=28.1368821292776, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI48994985, Length=195, Percent_Identity=30.2564102564103, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71980746, Length=259, Percent_Identity=23.9382239382239, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17559024, Length=219, Percent_Identity=25.1141552511416, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29932; Mature: 29932

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFFDTHTHLDYVSESLNLSIPQLVENAEHSNVKRILIVSVFAENFAKVTACAKQMPNNL
CCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCE
VYGLGLHPLYIQQHQTEHLDNLERLLARQDPQCTALAEIGLERAVESLCTPDLWQKQCEF
EEECCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LEAQLAFAKRFNLPVNLHSRRSHDQLSVFLKKAKLTNTGVIHGFAGSYEQAKRFVDLGYK
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCEE
IGVGGTITYARANKTREAIRKLPLESLLLETDSPDMPVFGFQGEPNRPECLAVSFQTLCE
ECCCCEEEEECCHHHHHHHHHCCHHHHHCCCCCCCCCEECCCCCCCCCCEEEHHHHHHHH
LRNESPAVIAETIWNTGEQLFWYK
HCCCCCHHHHHHHHCCCCEEEEEC
>Mature Secondary Structure
MQFFDTHTHLDYVSESLNLSIPQLVENAEHSNVKRILIVSVFAENFAKVTACAKQMPNNL
CCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCE
VYGLGLHPLYIQQHQTEHLDNLERLLARQDPQCTALAEIGLERAVESLCTPDLWQKQCEF
EEECCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LEAQLAFAKRFNLPVNLHSRRSHDQLSVFLKKAKLTNTGVIHGFAGSYEQAKRFVDLGYK
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCEE
IGVGGTITYARANKTREAIRKLPLESLLLETDSPDMPVFGFQGEPNRPECLAVSFQTLCE
ECCCCEEEEECCHHHHHHHHHCCHHHHHCCCCCCCCCEECCCCCCCCCCEEEHHHHHHHH
LRNESPAVIAETIWNTGEQLFWYK
HCCCCCHHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]