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The map label for this gene is yciO [C]

Identifier: 126208629

GI number: 126208629

Start: 1338031

End: 1338648

Strand: Reverse

Name: yciO [C]

Synonym: APL_1161

Alternate gene names: 126208629

Gene position: 1338648-1338031 (Counterclockwise)

Preceding gene: 126208630

Following gene: 126208628

Centisome position: 58.86

GC content: 39.81

Gene sequence:

>618_bases
ATGAGCCAATTTTTTTATATTCATCCTGATAACCCTCAGGCACGTTTGATTAATCAAGCGGTAGAAATTATTAAAAATGG
TGGCGTTATTATTTATCCGACAGATTCAGGTTATGCTTTAGGCTGTGCAATCGGTGAAAAACACGCAATGGATCGCATTG
TTGCGATTCGTAAATTACCTGAAAATCACAATTTTACCTTGGTATGTAGTGATTTGTCAGAGCTTTCCACTTACGCATTA
GTCACTAATCAATCTTATCGCTTAATCAAAAATAACACCCCAAATCCTTACACCTTTATTTTACCGGCAACCAAAGACGT
ACCGCGTAGATTAATGACCAAACGTAAGACGATAGGGATTCGTGTACCGGATAATGCGATCGCTTTGGCATTAATTGCAG
CGTTAGGCGAGCCGATTTTATCGTGTTCGCTAATGTTACCTGATACGGAAATTACCGAATCGGATCCGGATGAAATTCGA
GAACATTTGGAACATCGTGTGGATTTAATTATTCACGGCGGTTATTTAGGTCAAGAGCCGACAACCGTGATTGATTTAAC
CGAAGAGAGTCCTCGAATTATTCGTGAAGGATCGGGCGATATTACGCCGTTTAATTAA

Upstream 100 bases:

>100_bases
GTTCTTTTACGAGATGATTTCTATAACGCACAATTACTTTAGAGAATATAAGAATGTTGGTGTATAATGCACCAACATTT
TTTTCGAAGGATATTACGCT

Downstream 100 bases:

>100_bases
TGATTTTCTCCTTCTTAAAGGAGGATATATATATTTTTAAAGACGCTCGTGAGAGCGACAAAGGAATCTTAATGAAAACA
TTTCAAACAAAAAATGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSQFFYIHPDNPQARLINQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLSELSTYAL
VTNQSYRLIKNNTPNPYTFILPATKDVPRRLMTKRKTIGIRVPDNAIALALIAALGEPILSCSLMLPDTEITESDPDEIR
EHLEHRVDLIIHGGYLGQEPTTVIDLTEESPRIIREGSGDITPFN

Sequences:

>Translated_205_residues
MSQFFYIHPDNPQARLINQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLSELSTYAL
VTNQSYRLIKNNTPNPYTFILPATKDVPRRLMTKRKTIGIRVPDNAIALALIAALGEPILSCSLMLPDTEITESDPDEIR
EHLEHRVDLIIHGGYLGQEPTTVIDLTEESPRIIREGSGDITPFN
>Mature_204_residues
SQFFYIHPDNPQARLINQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLSELSTYALV
TNQSYRLIKNNTPNPYTFILPATKDVPRRLMTKRKTIGIRVPDNAIALALIAALGEPILSCSLMLPDTEITESDPDEIRE
HLEHRVDLIIHGGYLGQEPTTVIDLTEESPRIIREGSGDITPFN

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=71.219512195122, Blast_Score=312, Evalue=1e-86,
Organism=Escherichia coli, GI2367210, Length=140, Percent_Identity=27.8571428571429, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22820; Mature: 22689

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYIHPDNPQARLINQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLP
CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHCC
ENHNFTLVCSDLSELSTYALVTNQSYRLIKNNTPNPYTFILPATKDVPRRLMTKRKTIGI
CCCCEEEEECCHHHCCEEEEEECCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHEEEE
RVPDNAIALALIAALGEPILSCSLMLPDTEITESDPDEIREHLEHRVDLIIHGGYLGQEP
ECCCHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCC
TTVIDLTEESPRIIREGSGDITPFN
CEEEEECCCCCCEEECCCCCCCCCC
>Mature Secondary Structure 
SQFFYIHPDNPQARLINQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLP
CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHCC
ENHNFTLVCSDLSELSTYALVTNQSYRLIKNNTPNPYTFILPATKDVPRRLMTKRKTIGI
CCCCEEEEECCHHHCCEEEEEECCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHEEEE
RVPDNAIALALIAALGEPILSCSLMLPDTEITESDPDEIREHLEHRVDLIIHGGYLGQEP
ECCCHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCC
TTVIDLTEESPRIIREGSGDITPFN
CEEEEECCCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]