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The map label for this gene is yfiO [C]

Identifier: 126208591

GI number: 126208591

Start: 1297062

End: 1297838

Strand: Reverse

Name: yfiO [C]

Synonym: APL_1121

Alternate gene names: 126208591

Gene position: 1297838-1297062 (Counterclockwise)

Preceding gene: 126208593

Following gene: 126208590

Centisome position: 57.06

GC content: 41.57

Gene sequence:

>777_bases
ATGCGTAAATTTACTTCTCTTGCTTCTCTCGTATTGGCAGGACTTTTAGTTGTAGGTTGTTCAAGTGCGAATAAAGAATT
AGAAGAAACGTCGGCACAAGATCTCTACACCAAAGGTCAAACCTATTTGCAAGACGGCGATTATAATTCTGCAATTCGTT
ATTTGGATGCAATTGGGGCTAAAGGCGGACAAGGTACGTTCGGTGAACAAACGCAACTAAGTTTAATTTTCGCAAATTAT
AAAATCGGCGAGTATTATAAGGCGTTGGATGCGGCGGAACGTTTCGTACGCGCCTATCCGAACAGTGCAAGTATGGATTA
TGTTTATTATTTGGCGGGTTTAAGTAATGCGCGTTTAGGCGATAATTTTATTCAAGATTTCTTCGGCGTTAATCGTGCTT
CTCGCGCATTAGACAGTGTGCGTAACGCATACGGTAGCTTCCAAACTATCGTGCAACATTATCCGCAAAGCCAATATGCA
CGTGATGCGCAAAATTGGATGGCGTATTTAATTAATCGTATGGCGGAGCATGAATTGTCCATCGTAAAATTCTACGATGA
GCGAGAGGCTTATGTAGCGGTGGTAAACCGAGTAGAAGAAATGATGCGTTTTTATCCGGAAAGTAAACCGACCTATCAAG
CGCTTTCTTATATGCAAAAAGCCTATGAACAAATGGGCGTGAAAGATTCGGCGGAGAAAGTCGCGGCATTAATCGAAGCG
AATAAAGATAAAAACTTCCCTGAAGCGATTAAGCCTGAATATAGCGAACAATTCTAA

Upstream 100 bases:

>100_bases
ATAAGGCATATCTGTATGAACTTAGCAAAGTGCCATCGGTCAAACGAAACTATTGTACATTAACTTTTCATTGCACACAC
TTTTTTATAGGTAAAATCAT

Downstream 100 bases:

>100_bases
GCAAGCGGTTGATTTTTATAAAAGTTTTGCAATTTTAGGGGCGTTATTTTTGAATAATGCCCCTTTCCCATTTCATAAAT
AAGACGAAAATATGCGAATT

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MRKFTSLASLVLAGLLVVGCSSANKELEETSAQDLYTKGQTYLQDGDYNSAIRYLDAIGAKGGQGTFGEQTQLSLIFANY
KIGEYYKALDAAERFVRAYPNSASMDYVYYLAGLSNARLGDNFIQDFFGVNRASRALDSVRNAYGSFQTIVQHYPQSQYA
RDAQNWMAYLINRMAEHELSIVKFYDEREAYVAVVNRVEEMMRFYPESKPTYQALSYMQKAYEQMGVKDSAEKVAALIEA
NKDKNFPEAIKPEYSEQF

Sequences:

>Translated_258_residues
MRKFTSLASLVLAGLLVVGCSSANKELEETSAQDLYTKGQTYLQDGDYNSAIRYLDAIGAKGGQGTFGEQTQLSLIFANY
KIGEYYKALDAAERFVRAYPNSASMDYVYYLAGLSNARLGDNFIQDFFGVNRASRALDSVRNAYGSFQTIVQHYPQSQYA
RDAQNWMAYLINRMAEHELSIVKFYDEREAYVAVVNRVEEMMRFYPESKPTYQALSYMQKAYEQMGVKDSAEKVAALIEA
NKDKNFPEAIKPEYSEQF
>Mature_258_residues
MRKFTSLASLVLAGLLVVGCSSANKELEETSAQDLYTKGQTYLQDGDYNSAIRYLDAIGAKGGQGTFGEQTQLSLIFANY
KIGEYYKALDAAERFVRAYPNSASMDYVYYLAGLSNARLGDNFIQDFFGVNRASRALDSVRNAYGSFQTIVQHYPQSQYA
RDAQNWMAYLINRMAEHELSIVKFYDEREAYVAVVNRVEEMMRFYPESKPTYQALSYMQKAYEQMGVKDSAEKVAALIEA
NKDKNFPEAIKPEYSEQF

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=241, Percent_Identity=39.8340248962656, Blast_Score=187, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29282; Mature: 29282

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFTSLASLVLAGLLVVGCSSANKELEETSAQDLYTKGQTYLQDGDYNSAIRYLDAIGA
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHCC
KGGQGTFGEQTQLSLIFANYKIGEYYKALDAAERFVRAYPNSASMDYVYYLAGLSNARLG
CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
DNFIQDFFGVNRASRALDSVRNAYGSFQTIVQHYPQSQYARDAQNWMAYLINRMAEHELS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVKFYDEREAYVAVVNRVEEMMRFYPESKPTYQALSYMQKAYEQMGVKDSAEKVAALIEA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
NKDKNFPEAIKPEYSEQF
CCCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MRKFTSLASLVLAGLLVVGCSSANKELEETSAQDLYTKGQTYLQDGDYNSAIRYLDAIGA
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHCC
KGGQGTFGEQTQLSLIFANYKIGEYYKALDAAERFVRAYPNSASMDYVYYLAGLSNARLG
CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
DNFIQDFFGVNRASRALDSVRNAYGSFQTIVQHYPQSQYARDAQNWMAYLINRMAEHELS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVKFYDEREAYVAVVNRVEEMMRFYPESKPTYQALSYMQKAYEQMGVKDSAEKVAALIEA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
NKDKNFPEAIKPEYSEQF
CCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10735874 [H]