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The map label for this gene is lptF [H]

Identifier: 126208575

GI number: 126208575

Start: 1274992

End: 1276023

Strand: Direct

Name: lptF [H]

Synonym: APL_1103

Alternate gene names: 126208575

Gene position: 1274992-1276023 (Clockwise)

Preceding gene: 126208574

Following gene: 126208576

Centisome position: 56.06

GC content: 43.7

Gene sequence:

>1032_bases
ATGTTTTTTAGCCAGCAGTTGATCACCGTGCTGAATTCCGCCGTCAGCGGAAAAGTACCGACCGACTTAGTGCTGAGTTT
ATTAGGGCTGGGGATGCCGGCTTTAGCTCAATTTATGTTACCGCTTTCCTTATTTGTCGCATTATTGCTGACCTTAGGGC
GTTTTTATGCCGAAAGTGAAATTACCGTGATGCGAGCCTGCGGTATCGGGAAAAGTTTATTAACCAAAGTAGCGTTTTTT
CTGTCTATTTTCACCACGGCATTAGCGGTGTATAACGTGTTTTGGCTGACACCTTGGGCAATCAACAAGCAAAGTGAAAT
GTTAGCGGAAGCGAAATCCAACCCTCGTTTTTCAGCATTGTCGGCCGGGCAATTTATGACCGCCGGCGGTTATGTGCTAT
TTATTGAAAATATTAATAACGAGCAAAATAAATTAAATGATATTTATGTATTCCAGCCGGATCAACAGAAGAAAAATCGT
CCTTCCGTTGTGGTGGCGGAATCCGGTCAGCTACAAGGTTTGCCGAACGGCGATCAAATTCTTACGCTTGAAAACAGTAC
GCGCTATGAGGGGACGGCTAACGTAGCGGACTTTAGAATTTCTCATTTCGACAGTTATCAAGCCTATCTCGGCTATCAAG
ATGTCGATTCTAATGAAAAATTAGTACAACGTGCGGATTTCAATAAATTAATGGCCGACCAATCAAATGAAGCAAAAGCG
GAACTACAATGGCGCTTTGCACTGATTTTAGCCGTACCGCTCATGGCATTATTAGCCGTGCCGATGAGTAGCGTGAACCC
TCGTCAAGGTCGTTTCGCTAAAGTCATTCCGGCGGTATTGCTGTATTTAATCTATTTCTTATTACAAAGCTCGCTCAAAT
CTTCCGGCGCGTCAGGCAAATTAGATGCGACCTTATTAATGCCGTTAGTGTCGATTGCATTCTTTATACTGGCAATGGTG
ATGAACTTCTGGGATACAAAATGGATGTCTGCGATTCGTTATTCTTTCAGTCGTAATAAGGCGGTGGCGTAA

Upstream 100 bases:

>100_bases
AATCGGCGGCTAATATGAGAGATATAATGTGATATTAAGTCGATACTTAACGAAAGAAATTTTTAAAAGCCAACTGGCTA
TTCTGTTTATTCTGCTACTA

Downstream 100 bases:

>100_bases
ATGAATTTATTTGGTATGAATATTCTCGAACGCTATATCGGCAAGACCATTATTACGATGATTTTTGCCGTATTGTTAAT
GTCGAGCGGCTTGGTGTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MFFSQQLITVLNSAVSGKVPTDLVLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAESEITVMRACGIGKSLLTKVAFF
LSIFTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSALSAGQFMTAGGYVLFIENINNEQNKLNDIYVFQPDQQKKNR
PSVVVAESGQLQGLPNGDQILTLENSTRYEGTANVADFRISHFDSYQAYLGYQDVDSNEKLVQRADFNKLMADQSNEAKA
ELQWRFALILAVPLMALLAVPMSSVNPRQGRFAKVIPAVLLYLIYFLLQSSLKSSGASGKLDATLLMPLVSIAFFILAMV
MNFWDTKWMSAIRYSFSRNKAVA

Sequences:

>Translated_343_residues
MFFSQQLITVLNSAVSGKVPTDLVLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAESEITVMRACGIGKSLLTKVAFF
LSIFTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSALSAGQFMTAGGYVLFIENINNEQNKLNDIYVFQPDQQKKNR
PSVVVAESGQLQGLPNGDQILTLENSTRYEGTANVADFRISHFDSYQAYLGYQDVDSNEKLVQRADFNKLMADQSNEAKA
ELQWRFALILAVPLMALLAVPMSSVNPRQGRFAKVIPAVLLYLIYFLLQSSLKSSGASGKLDATLLMPLVSIAFFILAMV
MNFWDTKWMSAIRYSFSRNKAVA
>Mature_343_residues
MFFSQQLITVLNSAVSGKVPTDLVLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAESEITVMRACGIGKSLLTKVAFF
LSIFTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSALSAGQFMTAGGYVLFIENINNEQNKLNDIYVFQPDQQKKNR
PSVVVAESGQLQGLPNGDQILTLENSTRYEGTANVADFRISHFDSYQAYLGYQDVDSNEKLVQRADFNKLMADQSNEAKA
ELQWRFALILAVPLMALLAVPMSSVNPRQGRFAKVIPAVLLYLIYFLLQSSLKSSGASGKLDATLLMPLVSIAFFILAMV
MNFWDTKWMSAIRYSFSRNKAVA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=341, Percent_Identity=49.5601173020528, Blast_Score=300, Evalue=1e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 38073; Mature: 38073

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFSQQLITVLNSAVSGKVPTDLVLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAESE
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ITVMRACGIGKSLLTKVAFFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSAL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEE
SAGQFMTAGGYVLFIENINNEQNKLNDIYVFQPDQQKKNRPSVVVAESGQLQGLPNGDQI
CCCCEEECCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCEE
LTLENSTRYEGTANVADFRISHFDSYQAYLGYQDVDSNEKLVQRADFNKLMADQSNEAKA
EEECCCCCCCCCCCHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
ELQWRFALILAVPLMALLAVPMSSVNPRQGRFAKVIPAVLLYLIYFLLQSSLKSSGASGK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
LDATLLMPLVSIAFFILAMVMNFWDTKWMSAIRYSFSRNKAVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFFSQQLITVLNSAVSGKVPTDLVLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAESE
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ITVMRACGIGKSLLTKVAFFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSAL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEE
SAGQFMTAGGYVLFIENINNEQNKLNDIYVFQPDQQKKNRPSVVVAESGQLQGLPNGDQI
CCCCEEECCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCEE
LTLENSTRYEGTANVADFRISHFDSYQAYLGYQDVDSNEKLVQRADFNKLMADQSNEAKA
EEECCCCCCCCCCCHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
ELQWRFALILAVPLMALLAVPMSSVNPRQGRFAKVIPAVLLYLIYFLLQSSLKSSGASGK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
LDATLLMPLVSIAFFILAMVMNFWDTKWMSAIRYSFSRNKAVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]