Click here to switch to the map view.

The map label for this gene is ygcF [C]

Identifier: 126208571

GI number: 126208571

Start: 1270039

End: 1270671

Strand: Direct

Name: ygcF [C]

Synonym: APL_1099

Alternate gene names: 126208571

Gene position: 1270039-1270671 (Clockwise)

Preceding gene: 126208570

Following gene: 126208574

Centisome position: 55.84

GC content: 40.13

Gene sequence:

>633_bases
ATGACAAATACTATTTTTACGACAACGGCTTTTCCGATTGTCGAAATCTTTGAAAGCCTGCAAGGCGAGGGCTTTAACAC
CGGCTTACCCTGCATTTTCGTGCGTTTAGGCAAATGTAATCTGGCTTGCCCATGGTGCGATACCAACTATAACGAATACG
AAAAATGGAGCGTGGCGAAAATTCTTGAACGAGTAAAATCTTATTCCGCCAAGAATATTATCATTACCGGTGGCGAGCCG
ACAATGTATGCCAATTTAAGCGTATTGCTTGATGTATTTAAAGCGGAAGGTTATTGGTTAGCGATTGAAACGAACGGCTT
AAAAGCCGTACCGAAACAGATTGATTATATCGCTACCAGCCCGAAACTGATGTATCAAGAAAAATATTTGAGAGAATGTA
TTTCATTTGCTAACGAAGTCCGTATCGTGGTGGATAAAGGCGATGTACAAAGTTTTTGCGAACAAATCGAAACACAAATT
ACCGCTGAACATTACTACCTTTCTCCTTGCGAAGTGGACGGCAAAATGAATTTATTGGAAACCATTACCCAACTCGGTAT
TTTGAATCAACGAGCCTATAAACCGAAATGGCAACTGAGTTTACAAACACATAAACTGGTCGGTATTGAATAA

Upstream 100 bases:

>100_bases
CTCGTTAAGCATTCCCATCTCAATAAATATAGAGCATAAATCTTAGCCTAGATATTTCCCCTCTTTAGTAAAGAGGGGTG
ATGGGAGATTTGTAAAAATT

Downstream 100 bases:

>100_bases
TATTCATATGGTAAAGGCATCGAAGATTTCTTCCGATGCCTTTTTTGTTTTTAGGATGTAAAAATATCAATCATTATTTA
GAATAAGTTAATCACTTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTNTIFTTTAFPIVEIFESLQGEGFNTGLPCIFVRLGKCNLACPWCDTNYNEYEKWSVAKILERVKSYSAKNIIITGGEP
TMYANLSVLLDVFKAEGYWLAIETNGLKAVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQI
TAEHYYLSPCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE

Sequences:

>Translated_210_residues
MTNTIFTTTAFPIVEIFESLQGEGFNTGLPCIFVRLGKCNLACPWCDTNYNEYEKWSVAKILERVKSYSAKNIIITGGEP
TMYANLSVLLDVFKAEGYWLAIETNGLKAVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQI
TAEHYYLSPCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE
>Mature_209_residues
TNTIFTTTAFPIVEIFESLQGEGFNTGLPCIFVRLGKCNLACPWCDTNYNEYEKWSVAKILERVKSYSAKNIIITGGEPT
MYANLSVLLDVFKAEGYWLAIETNGLKAVPKQIDYIATSPKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQIT
AEHYYLSPCEVDGKMNLLETITQLGILNQRAYKPKWQLSLQTHKLVGIE

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=230, Percent_Identity=30, Blast_Score=98, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23903; Mature: 23772

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNTIFTTTAFPIVEIFESLQGEGFNTGLPCIFVRLGKCNLACPWCDTNYNEYEKWSVAK
CCCEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEECCCCCCCCCCHHHHHHHH
ILERVKSYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLKAVPKQIDYIATS
HHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCC
PKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLSPCEVDGKMNLLE
CHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCEEEECCCCCCCCHHHHH
TITQLGILNQRAYKPKWQLSLQTHKLVGIE
HHHHHHHHCCCCCCCCEEEEEEEEEEECCC
>Mature Secondary Structure 
TNTIFTTTAFPIVEIFESLQGEGFNTGLPCIFVRLGKCNLACPWCDTNYNEYEKWSVAK
CCEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEECCCCCCCCCCHHHHHHHH
ILERVKSYSAKNIIITGGEPTMYANLSVLLDVFKAEGYWLAIETNGLKAVPKQIDYIATS
HHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCC
PKLMYQEKYLRECISFANEVRIVVDKGDVQSFCEQIETQITAEHYYLSPCEVDGKMNLLE
CHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCEEEECCCCCCCCHHHHH
TITQLGILNQRAYKPKWQLSLQTHKLVGIE
HHHHHHHHCCCCCCCCEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]