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The map label for this gene is ompW [H]

Identifier: 126208558

GI number: 126208558

Start: 1256394

End: 1257041

Strand: Reverse

Name: ompW [H]

Synonym: APL_1086

Alternate gene names: 126208558

Gene position: 1257041-1256394 (Counterclockwise)

Preceding gene: 126208560

Following gene: 126208552

Centisome position: 55.27

GC content: 39.81

Gene sequence:

>648_bases
ATGAAAAAAGCAGTATTAGCGGCAGTATTAGGCGGTGCGTTATTAGCGGATTCGGCAATGGCACATCAAGCGGGCGATGT
GATTTTCCGTGCCGGTGCGATCGGTGTGATTGCAAATTCAAGTTCGGATTATCAAACCGGGGCGGACGTAAACTTAGATG
TAAATAATAATATTCAGCTTGGTTTAACCGGTACCTATATGTTAAGTGATAATTTAGGTCTTGAATTATTAGCGGCAACA
CCGTTTTCTCACAAAATCACCGGTAAGTTAGGTGCAACAGATTTAGGCGAAGTGGCAAAAGTAAAACATCTTCCGCCGAG
CCTTTACTTACAATATTATTTCTTTGATTCTAATGCGACAGTTCGTCCATACGTTGGTGCCGGTTTAAACTATACTCGCT
TTTTCAGTGCTGAAAGTTTAAAACCGCAATTAGTACAAAACTTACGTGTTAAAAAACATTCCGTCGCACCGATTGCGAAT
TTAGGTGTTGATGTGAAATTAACGGATAATCTATCATTCAATGCGGCAGCTTGGTACACACGTATTAAAACTACTGCCGA
TTATGATGTTCCGGGATTAGGTCATGTAAGTACACCGATTACTTTAGATCCTGTTGTATTATTCTCAGGTATTAGCTACA
AATTCTAA

Upstream 100 bases:

>100_bases
TGATTCTTGTCAATAAAAGTTAGCCGAATTGTTCTTAGAATGTTATTAACGTAACGAATTGGTTACTTTTTTATTTTTAA
GAAAATATTAAGAGGTCAAA

Downstream 100 bases:

>100_bases
GTATTTTGAAACTGTTATGAGAAAGGGAGCGTTAATCGCTCCCTTTTTGTTGTAAAAAATCCTTGAAAAACGACCGCTTG
TTAAGCACAAAAATGTAGGA

Product: outer membrane protein W precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKKAVLAAVLGGALLADSAMAHQAGDVIFRAGAIGVIANSSSDYQTGADVNLDVNNNIQLGLTGTYMLSDNLGLELLAAT
PFSHKITGKLGATDLGEVAKVKHLPPSLYLQYYFFDSNATVRPYVGAGLNYTRFFSAESLKPQLVQNLRVKKHSVAPIAN
LGVDVKLTDNLSFNAAAWYTRIKTTADYDVPGLGHVSTPITLDPVVLFSGISYKF

Sequences:

>Translated_215_residues
MKKAVLAAVLGGALLADSAMAHQAGDVIFRAGAIGVIANSSSDYQTGADVNLDVNNNIQLGLTGTYMLSDNLGLELLAAT
PFSHKITGKLGATDLGEVAKVKHLPPSLYLQYYFFDSNATVRPYVGAGLNYTRFFSAESLKPQLVQNLRVKKHSVAPIAN
LGVDVKLTDNLSFNAAAWYTRIKTTADYDVPGLGHVSTPITLDPVVLFSGISYKF
>Mature_215_residues
MKKAVLAAVLGGALLADSAMAHQAGDVIFRAGAIGVIANSSSDYQTGADVNLDVNNNIQLGLTGTYMLSDNLGLELLAAT
PFSHKITGKLGATDLGEVAKVKHLPPSLYLQYYFFDSNATVRPYVGAGLNYTRFFSAESLKPQLVQNLRVKKHSVAPIAN
LGVDVKLTDNLSFNAAAWYTRIKTTADYDVPGLGHVSTPITLDPVVLFSGISYKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=218, Percent_Identity=41.2844036697248, Blast_Score=151, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 22937; Mature: 22937

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAVLAAVLGGALLADSAMAHQAGDVIFRAGAIGVIANSSSDYQTGADVNLDVNNNIQL
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCEEEEEECCCEEE
GLTGTYMLSDNLGLELLAATPFSHKITGKLGATDLGEVAKVKHLPPSLYLQYYFFDSNAT
EEEEEEEEECCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCE
VRPYVGAGLNYTRFFSAESLKPQLVQNLRVKKHSVAPIANLGVDVKLTDNLSFNAAAWYT
ECEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCHHHCCEEEEEECCCCCCCEEEEE
RIKTTADYDVPGLGHVSTPITLDPVVLFSGISYKF
EEECCCCCCCCCCCCCCCCCEECCEEEECCCCCCC
>Mature Secondary Structure
MKKAVLAAVLGGALLADSAMAHQAGDVIFRAGAIGVIANSSSDYQTGADVNLDVNNNIQL
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCEEEEEECCCEEE
GLTGTYMLSDNLGLELLAATPFSHKITGKLGATDLGEVAKVKHLPPSLYLQYYFFDSNAT
EEEEEEEEECCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCE
VRPYVGAGLNYTRFFSAESLKPQLVQNLRVKKHSVAPIANLGVDVKLTDNLSFNAAAWYT
ECEEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCHHHCCEEEEEECCCCCCCEEEEE
RIKTTADYDVPGLGHVSTPITLDPVVLFSGISYKF
EEECCCCCCCCCCCCCCCCCEECCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]