Click here to switch to the map view.

The map label for this gene is uxuR [H]

Identifier: 126208496

GI number: 126208496

Start: 1188100

End: 1188336

Strand: Direct

Name: uxuR [H]

Synonym: APL_1022

Alternate gene names: 126208496

Gene position: 1188100-1188336 (Clockwise)

Preceding gene: 126208495

Following gene: 126208497

Centisome position: 52.24

GC content: 35.02

Gene sequence:

>237_bases
ATGACAAGCAATGCAGATTTACGTTCATATAAAAAAATTGGTTCGATTTTAAAACAAGAATTAATTGACGGTATTTACCA
AGTTGGCGAACGACTGCTACCTGAACGAGATCTTGCAGAAAAATTAAATGTAAGCCGCACGGTCATTCGTGAAGCAATCA
TTATGTTGGAATTAGAAAATTTAGTGTCTGTTCGAAAAGGATCCGGCGTTTATGTTATTCGCTTGGTTATTCTTTAA

Upstream 100 bases:

>100_bases
AACGCTACCTGATAATGAAACAAGACAACTGGTCATAAACGGTAATGTCTTCACAAAAGGAGAGTTATTTTCATTAAATA
ATCCTAAAGAGAGTTAAAAA

Downstream 100 bases:

>100_bases
AGATCCGTCAAAAACTATTTTTTGGTTATCTCTACCAATAGCGACATTAGGTCTTTACTTACTTTCATCCAGCCAAAACG
GAATCCGGCTTTCTTTAGGA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 77

Protein sequence:

>78_residues
MTSNADLRSYKKIGSILKQELIDGIYQVGERLLPERDLAEKLNVSRTVIREAIIMLELENLVSVRKGSGVYVIRLVIL

Sequences:

>Translated_78_residues
MTSNADLRSYKKIGSILKQELIDGIYQVGERLLPERDLAEKLNVSRTVIREAIIMLELENLVSVRKGSGVYVIRLVIL
>Mature_77_residues
TSNADLRSYKKIGSILKQELIDGIYQVGERLLPERDLAEKLNVSRTVIREAIIMLELENLVSVRKGSGVYVIRLVIL

Specific function: Repressor for the uxuRBA operon [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790780, Length=66, Percent_Identity=51.5151515151515, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI87082208, Length=66, Percent_Identity=53.030303030303, Blast_Score=75, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 8842; Mature: 8710

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNADLRSYKKIGSILKQELIDGIYQVGERLLPERDLAEKLNVSRTVIREAIIMLELEN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LVSVRKGSGVYVIRLVIL
HHHHHCCCCEEEEEEEEC
>Mature Secondary Structure 
TSNADLRSYKKIGSILKQELIDGIYQVGERLLPERDLAEKLNVSRTVIREAIIMLELEN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LVSVRKGSGVYVIRLVIL
HHHHHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]