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The map label for this gene is apfD

Identifier: 126208353

GI number: 126208353

Start: 1017372

End: 1018010

Strand: Reverse

Name: apfD

Synonym: APL_0877

Alternate gene names: NA

Gene position: 1018010-1017372 (Counterclockwise)

Preceding gene: 126208354

Following gene: 126208352

Centisome position: 44.76

GC content: 34.74

Gene sequence:

>639_bases
ATGAGTTCTCCGATTTTCGCATGGTGGTGTAAGCGAAGTATTCCTCAATTTGCAGAATATATTAATCGGCAAATTTACTC
TGAATATTCGACGTTATTACCTATAGCATACAGCTATCAAGATTTTCGCAATGCTTCAAATTTACAGCCGAAATATAAAT
GGTGGGGCAATCTTTTTTATACCGTTTTTCCTCTGCTTGCCTTTGGAATTGCTGATCCCGTCGTTGCGTTGCTATTGATG
ATTTTATGCTTTCTATCGGCTTTAGATTATTGTTATTACTTAACGGATATTCGCTATGTTGCTGCGGTCTTTGTTTTGGC
ATTATTACATTCGGTGGAAATGGCTTATCAAGAAAGTCTGCTTTTTTGCTGTCTTTTCTTTGGTATGCTGGGTTTATGCT
CTCATTTAATCTTTAAAAAAGAAATATTGGGAAGCGGGGACAGTTTATTGTTTATCGCTCTCTCGCCCTTATTCTCATTG
GAAGAGGTTTTTCTTTTATTATTGATCGCTTCCTTTTCCGGTATCGCGTTTTATCTGTTCTATTTCTTAGTGATGAAAAA
AACACTTAAAAAATTACCCTTTATTCCTTTTATTAGCTTTTCGACTTTCGTGCTAATTATTGATAAAATTTATATCTAA

Upstream 100 bases:

>100_bases
TAATTATCGGTACGGTTTTGATCGGATTATATTTACCGATTTTTGATTTAGGCGGACTAGTCGGAGGCGGTTAGTGACAA
TAGCGCAATTCGTTATCGTA

Downstream 100 bases:

>100_bases
TGGTTAGTATGGGAATTACAAATGAGCTATGTAGTCGGTTTAACCGGTGGAATCGGAAGTGGCAAAACGACAGTCGCAAA
CTTATTTGCCGAACTCGGGG

Product: fimbrial leader peptidase

Products: NA

Alternate protein names: Tfp Pilus Assembly Pathway Fimbrial Leader Peptidase PilD; Fimbrial Leader Peptidase

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MSSPIFAWWCKRSIPQFAEYINRQIYSEYSTLLPIAYSYQDFRNASNLQPKYKWWGNLFYTVFPLLAFGIADPVVALLLM
ILCFLSALDYCYYLTDIRYVAAVFVLALLHSVEMAYQESLLFCCLFFGMLGLCSHLIFKKEILGSGDSLLFIALSPLFSL
EEVFLLLLIASFSGIAFYLFYFLVMKKTLKKLPFIPFISFSTFVLIIDKIYI

Sequences:

>Translated_212_residues
MSSPIFAWWCKRSIPQFAEYINRQIYSEYSTLLPIAYSYQDFRNASNLQPKYKWWGNLFYTVFPLLAFGIADPVVALLLM
ILCFLSALDYCYYLTDIRYVAAVFVLALLHSVEMAYQESLLFCCLFFGMLGLCSHLIFKKEILGSGDSLLFIALSPLFSL
EEVFLLLLIASFSGIAFYLFYFLVMKKTLKKLPFIPFISFSTFVLIIDKIYI
>Mature_211_residues
SSPIFAWWCKRSIPQFAEYINRQIYSEYSTLLPIAYSYQDFRNASNLQPKYKWWGNLFYTVFPLLAFGIADPVVALLLMI
LCFLSALDYCYYLTDIRYVAAVFVLALLHSVEMAYQESLLFCCLFFGMLGLCSHLIFKKEILGSGDSLLFIALSPLFSLE
EVFLLLLIASFSGIAFYLFYFLVMKKTLKKLPFIPFISFSTFVLIIDKIYI

Specific function: Unknown

COG id: COG1989

COG function: function code NOU; Type II secretory pathway, prepilin signal peptidase PulO and related peptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.23.43

Molecular weight: Translated: 24571; Mature: 24439

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPIFAWWCKRSIPQFAEYINRQIYSEYSTLLPIAYSYQDFRNASNLQPKYKWWGNLFY
CCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
TVFPLLAFGIADPVVALLLMILCFLSALDYCYYLTDIRYVAAVFVLALLHSVEMAYQESL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFCCLFFGMLGLCSHLIFKKEILGSGDSLLFIALSPLFSLEEVFLLLLIASFSGIAFYLF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFLVMKKTLKKLPFIPFISFSTFVLIIDKIYI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSPIFAWWCKRSIPQFAEYINRQIYSEYSTLLPIAYSYQDFRNASNLQPKYKWWGNLFY
CCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
TVFPLLAFGIADPVVALLLMILCFLSALDYCYYLTDIRYVAAVFVLALLHSVEMAYQESL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFCCLFFGMLGLCSHLIFKKEILGSGDSLLFIALSPLFSLEEVFLLLLIASFSGIAFYLF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFLVMKKTLKKLPFIPFISFSTFVLIIDKIYI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA