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The map label for this gene is rlpB [C]

Identifier: 126208349

GI number: 126208349

Start: 1014837

End: 1015331

Strand: Direct

Name: rlpB [C]

Synonym: APL_0873

Alternate gene names: 126208349

Gene position: 1014837-1015331 (Clockwise)

Preceding gene: 126208348

Following gene: 126208350

Centisome position: 44.62

GC content: 41.62

Gene sequence:

>495_bases
ATGTTAAAAAAACTCTCTCTTTTAGCCGTTCTCGGTTTAACCGCTTGCGGTTGGCACTTCAAAAACAATGAAGTGCTACC
GCAAGATCTGCGTACACTGACATTTGAAAGCGCCGATCAGCATAGCGATATGTCACGTACTTTACGTCATCAACTACAAC
TTAACGATGTAGAATTAGTTTCCGCAACGGAAGGCGTCGCTAAATTACGTCTTGTTGGTGCTTCAAGCGGCAGTAAAGTC
GTTTCAGTGTTTAAACAAGCGCGTGAAGCGGAAAAATTACTCACGTTAAATGTACAAGCAATCGTGGATGTACCGAAAAA
AGGCGCATATCCGTTAGAAGTTTCCGTTCACCGTACTTTCTTTGATGACTCTCGTGCCGCATTGGCAAAATCGGCAGAGC
AAGAAATGATTATGAAAGATATGTATGAGCAAGCTTCTCGCCAGCTTATCATCAAAATGGCCGGTTTACATAAAGAATTA
AATCAAGCTAAATAA

Upstream 100 bases:

>100_bases
ATAGCAATGAGGGCGAACTATGTTCGCCCTTTATTGTGAATATTACGGAAATGGGTATATGTAGCACTTCTCTACAACCC
TATTTTGATTGGAGTTCCCA

Downstream 100 bases:

>100_bases
TTCATTAACCACAGATAACACGGATTTCACGCAAACAAGCGGTTAAATTCTTGCACTTTTTTGCAAGCGGGCAATCCGTG
TTTATCCGTGTAATCCGTGG

Product: putative rare lipoprotein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MLKKLSLLAVLGLTACGWHFKNNEVLPQDLRTLTFESADQHSDMSRTLRHQLQLNDVELVSATEGVAKLRLVGASSGSKV
VSVFKQAREAEKLLTLNVQAIVDVPKKGAYPLEVSVHRTFFDDSRAALAKSAEQEMIMKDMYEQASRQLIIKMAGLHKEL
NQAK

Sequences:

>Translated_164_residues
MLKKLSLLAVLGLTACGWHFKNNEVLPQDLRTLTFESADQHSDMSRTLRHQLQLNDVELVSATEGVAKLRLVGASSGSKV
VSVFKQAREAEKLLTLNVQAIVDVPKKGAYPLEVSVHRTFFDDSRAALAKSAEQEMIMKDMYEQASRQLIIKMAGLHKEL
NQAK
>Mature_164_residues
MLKKLSLLAVLGLTACGWHFKNNEVLPQDLRTLTFESADQHSDMSRTLRHQLQLNDVELVSATEGVAKLRLVGASSGSKV
VSVFKQAREAEKLLTLNVQAIVDVPKKGAYPLEVSVHRTFFDDSRAALAKSAEQEMIMKDMYEQASRQLIIKMAGLHKEL
NQAK

Specific function: Unknown

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786860, Length=153, Percent_Identity=37.9084967320261, Blast_Score=120, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007485 [H]

Pfam domain/function: PF04390 RplB [H]

EC number: NA

Molecular weight: Translated: 18261; Mature: 18261

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKLSLLAVLGLTACGWHFKNNEVLPQDLRTLTFESADQHSDMSRTLRHQLQLNDVELV
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEE
SATEGVAKLRLVGASSGSKVVSVFKQAREAEKLLTLNVQAIVDVPKKGAYPLEVSVHRTF
HHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCCCCEEEEEEEHH
FDDSRAALAKSAEQEMIMKDMYEQASRQLIIKMAGLHKELNQAK
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKKLSLLAVLGLTACGWHFKNNEVLPQDLRTLTFESADQHSDMSRTLRHQLQLNDVELV
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEE
SATEGVAKLRLVGASSGSKVVSVFKQAREAEKLLTLNVQAIVDVPKKGAYPLEVSVHRTF
HHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCCCCEEEEEEEHH
FDDSRAALAKSAEQEMIMKDMYEQASRQLIIKMAGLHKELNQAK
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]