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The map label for this gene is dedA [C]

Identifier: 126208296

GI number: 126208296

Start: 947172

End: 947774

Strand: Direct

Name: dedA [C]

Synonym: APL_0820

Alternate gene names: 126208296

Gene position: 947172-947774 (Clockwise)

Preceding gene: 126208295

Following gene: 126208308

Centisome position: 41.64

GC content: 43.95

Gene sequence:

>603_bases
ATGGAATTCTTAATCAGCTTTTTCAGTAGCTATGGCTATTGGGCTGTATTTTTGGTTTTGTTGGCTTGTGGCTTCGGCGT
ACCGATTCCGGAAGATATTACTTTGGTTTCCGGCGGCGTGATTTCAGGCTTAGGCTATACCAATGTACATTGGATGTTAG
TCGTCAGTATGCTCGGCGTACTCATCGGCGATAGTACGATGTATTGGCTCGGACGTATTTACGGTGAAAGAATTCGCCAG
TTTCCGCTAATTCGTAATATTGTGACCGAAGAACGTTACCAGATGGTGCAGGAACGTTTTGAAAAACAAGGCAACCGCTT
ATTATTCTTAGCGCGTTTCTTACCGGGTTTACGTGCGGTGGTGTATCTGGTATCCGGTATTACTCGCCGTGTAAGTTATA
CTCGTTTCGTGTTGGTTGATTTCTGTGCGGCGATTATTTCCGTGCCGATTTGGGTCTATTTAGGCGATTACGGCGCACAA
AACCTCGATTGGCTACACGAACAAGTAAAAAACGGACAGCATATTATTTTTGCCGGTTTAGGTGTGATTGCCATCTATGT
AGGCTGGAAATGGCGTAAATCTCGTAAAAATAAACAAGCTTAA

Upstream 100 bases:

>100_bases
ACCCAATATCAACCTCAAACGATTGAGTTTCACCCCGAGTTAGTCTTACGTCGTTCTGTGAGAAACCTAAATAAATAATC
CGTTTATAGAAGGAGTAAAT

Downstream 100 bases:

>100_bases
TTTGATGAAAAAGACCACTTACACAAGCGGTCTTTTTTTACATAAAATGCCAAAACAAACCCCAAAGCAAAATACTTTGG
GGTTTTTATTTAGCTTAGAT

Product: putative membrane-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MEFLISFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGLGYTNVHWMLVVSMLGVLIGDSTMYWLGRIYGERIRQ
FPLIRNIVTEERYQMVQERFEKQGNRLLFLARFLPGLRAVVYLVSGITRRVSYTRFVLVDFCAAIISVPIWVYLGDYGAQ
NLDWLHEQVKNGQHIIFAGLGVIAIYVGWKWRKSRKNKQA

Sequences:

>Translated_200_residues
MEFLISFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGLGYTNVHWMLVVSMLGVLIGDSTMYWLGRIYGERIRQ
FPLIRNIVTEERYQMVQERFEKQGNRLLFLARFLPGLRAVVYLVSGITRRVSYTRFVLVDFCAAIISVPIWVYLGDYGAQ
NLDWLHEQVKNGQHIIFAGLGVIAIYVGWKWRKSRKNKQA
>Mature_200_residues
MEFLISFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGLGYTNVHWMLVVSMLGVLIGDSTMYWLGRIYGERIRQ
FPLIRNIVTEERYQMVQERFEKQGNRLLFLARFLPGLRAVVYLVSGITRRVSYTRFVLVDFCAAIISVPIWVYLGDYGAQ
NLDWLHEQVKNGQHIIFAGLGVIAIYVGWKWRKSRKNKQA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=160, Percent_Identity=28.125, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22926; Mature: 22926

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLISFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGLGYTNVHWMLVVSMLGV
CHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEECCCHHHCCCCHHHHHHHHHHHHHH
LIGDSTMYWLGRIYGERIRQFPLIRNIVTEERYQMVQERFEKQGNRLLFLARFLPGLRAV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHH
VYLVSGITRRVSYTRFVLVDFCAAIISVPIWVYLGDYGAQNLDWLHEQVKNGQHIIFAGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCCEEEEHHH
GVIAIYVGWKWRKSRKNKQA
HHHHHHHCCHHHHCCCCCCC
>Mature Secondary Structure
MEFLISFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGLGYTNVHWMLVVSMLGV
CHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEECCCHHHCCCCHHHHHHHHHHHHHH
LIGDSTMYWLGRIYGERIRQFPLIRNIVTEERYQMVQERFEKQGNRLLFLARFLPGLRAV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHH
VYLVSGITRRVSYTRFVLVDFCAAIISVPIWVYLGDYGAQNLDWLHEQVKNGQHIIFAGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCCEEEEHHH
GVIAIYVGWKWRKSRKNKQA
HHHHHHHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]