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The map label for this gene is yohK [C]

Identifier: 126208257

GI number: 126208257

Start: 895965

End: 896651

Strand: Reverse

Name: yohK [C]

Synonym: APL_0779

Alternate gene names: 126208257

Gene position: 896651-895965 (Counterclockwise)

Preceding gene: 126208258

Following gene: 126208256

Centisome position: 39.42

GC content: 44.4

Gene sequence:

>687_bases
ATGATTTACCTTTATTCATGTTTAACCGTCTTAGCGTTTTTAATTGGGCAGCGGATCAGCCAAAAATTAAAATCTTCGGT
GTTAAATCCGTTTGTGATTGCTTTAACGCTTGTCATTACTGTGATTGTGATTGGTAAAGTACCTTACACGGACTATTATC
AGGGTAATTTCCCGATCAACAATCTGCTTGGCGTGTCGGTTGTTGCACTCGCCCTGCCTTTTTACGAACAACTACCGCAA
ATTCGTAAAAAATGGCGACAAATCACGTTAGTTGTTGTATTCGGCACTTGTTTTACTATGCTGACGGGTGTTTTCTTTGC
CGCGTTATTAGGCGCAAGTCCGGATATTTTAGCGGCGATCGTGCCCAAATCGGTTTCGACGCCGATTGCTATCGCTATCG
CCACTCAAATCGGCGGTAGTTCGGCAATTACCGCCGTAGGCGTATTAGTTGCCGGCTTACTCGGTTCCGTTTTCGGATTT
GCCGTATTGCATCGTATCGGTGTGCGCAATGTCAGAGCGATCGGTTTGAGTATGGGAGCGGTTTCCCATGCGTTAGGTAC
GGGGCGTTGTATGGAATATAGCATTAAAACCGGCAGTTACAGCTCGATAGCGTTAGTTTTATGCGGCGTATTATCTTCGG
TATTGGCTCCGTTTGTTTTTAAACTTGTTATGCACTTGTTTTATTAA

Upstream 100 bases:

>100_bases
GGCTTCATTTGTATTGGCAAATATATTCAGTACGTCCCTTTCCTTGATCGCTATCGGATTATTCGCCCAATGGGTTTTTC
ATCAAAAATAGTAGGCGCTT

Downstream 100 bases:

>100_bases
TCAACGATTAATATCGGTTTTATACGGTTAGACGGCGTGTTTAAGTTGGTATATTGGCTAATTCAAGGTACAATCTGCGC
AATTTTTTTAATGAAGACCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MIYLYSCLTVLAFLIGQRISQKLKSSVLNPFVIALTLVITVIVIGKVPYTDYYQGNFPINNLLGVSVVALALPFYEQLPQ
IRKKWRQITLVVVFGTCFTMLTGVFFAALLGASPDILAAIVPKSVSTPIAIAIATQIGGSSAITAVGVLVAGLLGSVFGF
AVLHRIGVRNVRAIGLSMGAVSHALGTGRCMEYSIKTGSYSSIALVLCGVLSSVLAPFVFKLVMHLFY

Sequences:

>Translated_228_residues
MIYLYSCLTVLAFLIGQRISQKLKSSVLNPFVIALTLVITVIVIGKVPYTDYYQGNFPINNLLGVSVVALALPFYEQLPQ
IRKKWRQITLVVVFGTCFTMLTGVFFAALLGASPDILAAIVPKSVSTPIAIAIATQIGGSSAITAVGVLVAGLLGSVFGF
AVLHRIGVRNVRAIGLSMGAVSHALGTGRCMEYSIKTGSYSSIALVLCGVLSSVLAPFVFKLVMHLFY
>Mature_228_residues
MIYLYSCLTVLAFLIGQRISQKLKSSVLNPFVIALTLVITVIVIGKVPYTDYYQGNFPINNLLGVSVVALALPFYEQLPQ
IRKKWRQITLVVVFGTCFTMLTGVFFAALLGASPDILAAIVPKSVSTPIAIAIATQIGGSSAITAVGVLVAGLLGSVFGF
AVLHRIGVRNVRAIGLSMGAVSHALGTGRCMEYSIKTGSYSSIALVLCGVLSSVLAPFVFKLVMHLFY

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=217, Percent_Identity=44.2396313364055, Blast_Score=199, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 24264; Mature: 24264

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYLYSCLTVLAFLIGQRISQKLKSSVLNPFVIALTLVITVIVIGKVPYTDYYQGNFPIN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
NLLGVSVVALALPFYEQLPQIRKKWRQITLVVVFGTCFTMLTGVFFAALLGASPDILAAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VPKSVSTPIAIAIATQIGGSSAITAVGVLVAGLLGSVFGFAVLHRIGVRNVRAIGLSMGA
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSHALGTGRCMEYSIKTGSYSSIALVLCGVLSSVLAPFVFKLVMHLFY
HHHHHCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MIYLYSCLTVLAFLIGQRISQKLKSSVLNPFVIALTLVITVIVIGKVPYTDYYQGNFPIN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
NLLGVSVVALALPFYEQLPQIRKKWRQITLVVVFGTCFTMLTGVFFAALLGASPDILAAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VPKSVSTPIAIAIATQIGGSSAITAVGVLVAGLLGSVFGFAVLHRIGVRNVRAIGLSMGA
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSHALGTGRCMEYSIKTGSYSSIALVLCGVLSSVLAPFVFKLVMHLFY
HHHHHCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]