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The map label for this gene is ihfB

Identifier: 126208219

GI number: 126208219

Start: 844554

End: 844835

Strand: Reverse

Name: ihfB

Synonym: APL_0739

Alternate gene names: 126208219

Gene position: 844835-844554 (Counterclockwise)

Preceding gene: 126208220

Following gene: 126208218

Centisome position: 37.14

GC content: 37.59

Gene sequence:

>282_bases
ATGACTAAATCAGAACTCATTGAAAATTTAGTATCACTTAATCCTGCTTTACAAGTGAAATCGGTAGAAGACGGCGTAAA
AGAAATTTTAGAACAAATTATGCTGTTTCTTGAACGAGGAGAACGTGTTGAAGTAAGAGGATTTGGCAGTTTTTCTCTAC
ATTATCGACAACCTCGTGTCGGTCGCAATCCTAAAACGGGTGAAAGCGTCAAATTGGATGCAAAATATGTCCCGCATTTT
AAAGCGGGGAAAGATTTGAAAGAACGTGTCGATTTAGTATAG

Upstream 100 bases:

>100_bases
GCTTTCAAAGCAGCTAAAGGCGAATAATTAGAGCCTTTCTAATTAAAAGCGGGTATGTGGAAAGACATATCCGCTTTAAT
TTAAATAATCAGAGGAAGCT

Downstream 100 bases:

>100_bases
AATTCCAAGATGCGACAATAGTCTATCGTATCGTTTTTTATTTATCGGTAAAGCAAACGGAGCATGACATGAAGTATATT
TTTGGTATTTTGATTACTCT

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MTKSELIENLVSLNPALQVKSVEDGVKEILEQIMLFLERGERVEVRGFGSFSLHYRQPRVGRNPKTGESVKLDAKYVPHF
KAGKDLKERVDLV

Sequences:

>Translated_93_residues
MTKSELIENLVSLNPALQVKSVEDGVKEILEQIMLFLERGERVEVRGFGSFSLHYRQPRVGRNPKTGESVKLDAKYVPHF
KAGKDLKERVDLV
>Mature_92_residues
TKSELIENLVSLNPALQVKSVEDGVKEILEQIMLFLERGERVEVRGFGSFSLHYRQPRVGRNPKTGESVKLDAKYVPHFK
AGKDLKERVDLV

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=92, Percent_Identity=60.8695652173913, Blast_Score=124, Evalue=9e-31,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=34.0659340659341, Blast_Score=64, Evalue=1e-12,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=35.5555555555556, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=39.5604395604396, Blast_Score=63, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_ACTP2 (A3N0A3)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001053444.1
- ProteinModelPortal:   A3N0A3
- SMR:   A3N0A3
- STRING:   A3N0A3
- GeneID:   4849982
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_0739
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   PEKYVPH
- PhylomeDB:   A3N0A3
- ProtClustDB:   PRK00199
- BioCyc:   APLE416269:APL_0739-MONOMER
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 10595; Mature: 10464

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELIENLVSLNPALQVKSVEDGVKEILEQIMLFLERGERVEVRGFGSFSLHYRQPRV
CCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCC
GRNPKTGESVKLDAKYVPHFKAGKDLKERVDLV
CCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
TKSELIENLVSLNPALQVKSVEDGVKEILEQIMLFLERGERVEVRGFGSFSLHYRQPRV
CHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCC
GRNPKTGESVKLDAKYVPHFKAGKDLKERVDLV
CCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA