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The map label for this gene is 126208145

Identifier: 126208145

GI number: 126208145

Start: 760115

End: 760504

Strand: Reverse

Name: 126208145

Synonym: APL_0665

Alternate gene names: NA

Gene position: 760504-760115 (Counterclockwise)

Preceding gene: 126208146

Following gene: 126208144

Centisome position: 33.44

GC content: 37.95

Gene sequence:

>390_bases
ATGTATATGCTAGATACTAATACGGTGAGTTATTTCTTTAGGCAAGATCCTACTGTGGTTAAGAAACTACAACAACTTAA
TCCGGAATTGATTTGTATTTCATCGGTCACGGCTGCAGAGTTGTTTTATGGCGTAAAAAAACGTAATAATCAGAAACTTA
CTGCATTTTTAAATACTTTTTTATCTGCGATTACGGTGATGGATTGGGATTATCAAGTGGCGGAAGTTTATGGTCAGCTG
CGAGCAGAGATGGAACGAGAAGGCAAAATCATGGGCGTTCAAGATCAAATGATTGGAGCTCATGCCCTAGCAACAGAATG
TGTTCTTGTTTCCAGCGATAAAGCCTTTCAATTTATCCCTAATCTCGTATTAGAAAATTGGTGGAAGTAA

Upstream 100 bases:

>100_bases
CTTTGAGTTATTACCAATGCTTGAATGTGATGAACAGTTTTTATCGGAACAAGAACGCAAGCAAGAAATGGCAACTCGAG
ATCCGTTCGAGGGCTTTTAA

Downstream 100 bases:

>100_bases
TTTCTGCCTTAGCTCAACACCCAAAAATTAGTTTAATTTACGATTATACCTTAAATTAAACTAATTTTTTCTTTACTTGT
ATCATATTTTTTAGTTTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MYMLDTNTVSYFFRQDPTVVKKLQQLNPELICISSVTAAELFYGVKKRNNQKLTAFLNTFLSAITVMDWDYQVAEVYGQL
RAEMEREGKIMGVQDQMIGAHALATECVLVSSDKAFQFIPNLVLENWWK

Sequences:

>Translated_129_residues
MYMLDTNTVSYFFRQDPTVVKKLQQLNPELICISSVTAAELFYGVKKRNNQKLTAFLNTFLSAITVMDWDYQVAEVYGQL
RAEMEREGKIMGVQDQMIGAHALATECVLVSSDKAFQFIPNLVLENWWK
>Mature_129_residues
MYMLDTNTVSYFFRQDPTVVKKLQQLNPELICISSVTAAELFYGVKKRNNQKLTAFLNTFLSAITVMDWDYQVAEVYGQL
RAEMEREGKIMGVQDQMIGAHALATECVLVSSDKAFQFIPNLVLENWWK

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 14837; Mature: 14837

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMLDTNTVSYFFRQDPTVVKKLQQLNPELICISSVTAAELFYGVKKRNNQKLTAFLNTF
CEEECCCCEEEEECCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHH
LSAITVMDWDYQVAEVYGQLRAEMEREGKIMGVQDQMIGAHALATECVLVSSDKAFQFIP
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHEEEEECCCHHHHHH
NLVLENWWK
HHHHHHCCC
>Mature Secondary Structure
MYMLDTNTVSYFFRQDPTVVKKLQQLNPELICISSVTAAELFYGVKKRNNQKLTAFLNTF
CEEECCCCEEEEECCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHH
LSAITVMDWDYQVAEVYGQLRAEMEREGKIMGVQDQMIGAHALATECVLVSSDKAFQFIP
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHEEEEECCCHHHHHH
NLVLENWWK
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]