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The map label for this gene is ypfJ [H]

Identifier: 126208101

GI number: 126208101

Start: 706979

End: 707842

Strand: Direct

Name: ypfJ [H]

Synonym: APL_0619

Alternate gene names: 126208101

Gene position: 706979-707842 (Clockwise)

Preceding gene: 126208100

Following gene: 126208102

Centisome position: 31.08

GC content: 45.02

Gene sequence:

>864_bases
ATGCGTTTAGATAACGAAAGAGAAAGTTCGAATGTGGAAGATCGTCGCGGGCAATCCGGTTATGGTGCTCGTCGTGGCGG
CGGACGAGCCAAAGGCGGAATTTTAGGTTTTATTATCGTATTGGTCGGCGCTTATTATGGGGTCGATTTAACCGGCTTAA
TGGGTTATAGCGATTCATCGTCTTATCCGCAACAGCAAACGACTCAGATGCAAACTTCTGCGGAAGAAGAAGAGCTAAAT
ACGATTGCCCGTAAAGTGTTATATACTACGGAACGTATTTGGGGCGATTATTTTAAACAAAACGGTTTGACTTACAGAGA
GCCTAAATTAGTGCTTTATCGAGGCGTTACGCATACGGCTTGCGGAACGGGTCAATCTGCGATGGGGCCGTTTTATTGTC
CGGCGGATCAAAAAGTTTATCTCGATTTATCCTTTTATGACGATATGAAATCACAATTAAAAGCATCGGGCGATTTCGCA
TTTGCCTATGTAATTGCGCATGAAGTCGGACATCACGTACAAAATTTATTAGGGATTAGCGAACAAACGCAACGAGCACA
ACAAACCGCTCGCAATCAAGCGGCGGCTAATAAAATTTCCGTGAATGTAGAGCTTCAAGCCGACTGTTTTGCGGGAGTTT
GGGGTTATCAAATTCAAAAAGAAGGCAAATTGGATGCCGGTGACGTAGAGGAGGCTTTCGTCGCCTCACAAGCCGTAGGC
GATGATCGATTACAGAAACGCTCTCAAGGTTATGTCGTTCCCGATAGTTTTACTCACGGTTCATCCGCAGAACGCTTAAC
TTGGTTCCGCAAAGGGCTACAATCGGGTAATCCTGCCGTTTGTAATACTTTTACAAGCCGTTAA

Upstream 100 bases:

>100_bases
TCTTTTATTGCCGACTAAAACAAATCAATTACTTGTAGGATATAGATTGATATTCGTATAAAATTAATACCGTATTTTTA
CTTTAATTAAGGAAAGCAAT

Downstream 100 bases:

>100_bases
TTCATATAAATGGTTTTGTACTAGTAAAATAGTTCAAAACCATTTGACATACTTCTCTAATTCATCTACTTTAGTTCCAC
TCTTATTAATTTTGCCTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MRLDNERESSNVEDRRGQSGYGARRGGGRAKGGILGFIIVLVGAYYGVDLTGLMGYSDSSSYPQQQTTQMQTSAEEEELN
TIARKVLYTTERIWGDYFKQNGLTYREPKLVLYRGVTHTACGTGQSAMGPFYCPADQKVYLDLSFYDDMKSQLKASGDFA
FAYVIAHEVGHHVQNLLGISEQTQRAQQTARNQAAANKISVNVELQADCFAGVWGYQIQKEGKLDAGDVEEAFVASQAVG
DDRLQKRSQGYVVPDSFTHGSSAERLTWFRKGLQSGNPAVCNTFTSR

Sequences:

>Translated_287_residues
MRLDNERESSNVEDRRGQSGYGARRGGGRAKGGILGFIIVLVGAYYGVDLTGLMGYSDSSSYPQQQTTQMQTSAEEEELN
TIARKVLYTTERIWGDYFKQNGLTYREPKLVLYRGVTHTACGTGQSAMGPFYCPADQKVYLDLSFYDDMKSQLKASGDFA
FAYVIAHEVGHHVQNLLGISEQTQRAQQTARNQAAANKISVNVELQADCFAGVWGYQIQKEGKLDAGDVEEAFVASQAVG
DDRLQKRSQGYVVPDSFTHGSSAERLTWFRKGLQSGNPAVCNTFTSR
>Mature_287_residues
MRLDNERESSNVEDRRGQSGYGARRGGGRAKGGILGFIIVLVGAYYGVDLTGLMGYSDSSSYPQQQTTQMQTSAEEEELN
TIARKVLYTTERIWGDYFKQNGLTYREPKLVLYRGVTHTACGTGQSAMGPFYCPADQKVYLDLSFYDDMKSQLKASGDFA
FAYVIAHEVGHHVQNLLGISEQTQRAQQTARNQAAANKISVNVELQADCFAGVWGYQIQKEGKLDAGDVEEAFVASQAVG
DDRLQKRSQGYVVPDSFTHGSSAERLTWFRKGLQSGNPAVCNTFTSR

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=288, Percent_Identity=58.3333333333333, Blast_Score=327, Evalue=8e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 31683; Mature: 31683

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDNERESSNVEDRRGQSGYGARRGGGRAKGGILGFIIVLVGAYYGVDLTGLMGYSDSS
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHEECCCCCC
SYPQQQTTQMQTSAEEEELNTIARKVLYTTERIWGDYFKQNGLTYREPKLVLYRGVTHTA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
CGTGQSAMGPFYCPADQKVYLDLSFYDDMKSQLKASGDFAFAYVIAHEVGHHVQNLLGIS
CCCCCCCCCCEECCCCCEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
EQTQRAQQTARNQAAANKISVNVELQADCFAGVWGYQIQKEGKLDAGDVEEAFVASQAVG
HHHHHHHHHHHHHHHHCEEEEEEEEECCHHCCCCCCEEECCCCCCCCCHHHHHHHHHHCC
DDRLQKRSQGYVVPDSFTHGSSAERLTWFRKGLQSGNPAVCNTFTSR
HHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLDNERESSNVEDRRGQSGYGARRGGGRAKGGILGFIIVLVGAYYGVDLTGLMGYSDSS
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHEECCCCCC
SYPQQQTTQMQTSAEEEELNTIARKVLYTTERIWGDYFKQNGLTYREPKLVLYRGVTHTA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
CGTGQSAMGPFYCPADQKVYLDLSFYDDMKSQLKASGDFAFAYVIAHEVGHHVQNLLGIS
CCCCCCCCCCEECCCCCEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
EQTQRAQQTARNQAAANKISVNVELQADCFAGVWGYQIQKEGKLDAGDVEEAFVASQAVG
HHHHHHHHHHHHHHHHCEEEEEEEEECCHHCCCCCCEEECCCCCCCCCHHHHHHHHHHCC
DDRLQKRSQGYVVPDSFTHGSSAERLTWFRKGLQSGNPAVCNTFTSR
HHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]