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The map label for this gene is rcpA [C]

Identifier: 126208037

GI number: 126208037

Start: 624679

End: 626067

Strand: Reverse

Name: rcpA [C]

Synonym: APL_0555

Alternate gene names: 126208037

Gene position: 626067-624679 (Counterclockwise)

Preceding gene: 126208038

Following gene: 126208036

Centisome position: 27.53

GC content: 39.24

Gene sequence:

>1389_bases
ATGCAAATTAATAAATTCTCAAAAACCTTACTTAGCTCCGCATTATTAGGACTTTTAGCGTTATCGCATTCGGCTATGGC
AAAAACATTTACCTTGGAGCAAGGACAAAGCCAATTAATCAAAACCAATGCCAAAATCGATACGATTTTCGTTTCTTCAT
CCGAAGTCGCAGACTATGAAATTTTGGACGATAACAGTTTTATGCTGTATGCCAAAGCGGAAGGTCGCTCGGAAGTGATT
GCTTTCGATGCAAACGGTACGCCGCTTACGGAAGATTTTGTAAACGTAAATAATGCGATTAACAATATTGCGGCGACCAA
TCAACAAATTCAAACCCGTTTTCCGAATAGTAACCTGACGGTAAAAAAAGTCGGTAAGGCTTATGTACTTGAAGGGAAAG
CGAAAAACGCGGCGGAAAGTGATGAAATCAATCGAATTGTAGGCGAATCGCTCGGTGCGGGCAAAAAAGTTATCGAAACA
AAACTTAAACATAACGATAGCGAAGAAAACGTCCCGTTTTTAGATAAATACCAATATGAAGGCGTGATCAATAATGCCAA
TGAGGAAAATGCCACTCAAATTAATGTGAAATTAACCGTTGCCGAAGTAAATAAAACCTTTTCCGATGAAATCGGTATTA
ACTGGAGCAACTTAAGCGGTAATTTTTTCCGAAATCTTGGTAATGCCGCCATTCAAGGTAATTTCAATAAAAACGGCGGT
CAGTTGGCTTTAGTCAATTCCAATAATTTAAATGTATTAATTAGCGCATTAGATAATCAAAACAACGGCAAAATTCTCGC
CGAACCGAATATTTCCATGCTCTCCGGCGAAACGGCAGACATCTTAGTCGGCGGTGAAGTACCTTTCGTACAACGTGATA
AAGACGGTGAACTAAGCGTGCTTTATAAAGAATTCGGTATCAAGCTTGCCGTAGGCGCGAAAGTACAAAAAAGCGATCGT
ATTCGTCTAGTGTTATCACAATCCGTTAGTACGATTGCGGGCAATTATGAAATTGTAAACAGCCGCATCCCTATTTTTAA
TACACGCCGTTCAAAATCAACATTCGAGGTCGGTAACGGCGAAAGCTTTATTATCAGCGGATTACTGAATAAACAAGATA
TTGAAGGAATCAAAAAAGTACCGGTTTTAGGTGATATTCCTATCTTAGGCGCATTCTTCCGCAACGCAAGTTCATCTCGT
GAAAGTAAAGAGCTTGTTGTGGTAGCGACAGTAAATTTAGTAAAACCGGTGGACGGTTCGCAAGTTCTTTATCCTACGTT
TGAAAATACCGGCACGATGGAGCGTTTCTTTAACAGTTCATCGCTTAAAAATGTTTATCACAAAACATTAACGACTAATT
TCTTAAAAAACGGTGGGTTTATCCAATGA

Upstream 100 bases:

>100_bases
AAGCAAGCCAAACTTATTGCATTACCGAGTGGCTTAGAGGCAACAGAAAAACCGTTAAATCACCGTGGCATGTTTATTCG
CCAACTACGAGGAAAAAATA

Downstream 100 bases:

>100_bases
AAAAATTAATCGCAATCTTATGTAGTGGATTAGGACTGGCTCTAACCACCCACGCAATAGCTAATGCGGAATTATTAGAA
AATATTCATCCTGTTCAACC

Product: rough colony protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MQINKFSKTLLSSALLGLLALSHSAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVI
AFDANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVIET
KLKHNDSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEVNKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGG
QLALVNSNNLNVLISALDNQNNGKILAEPNISMLSGETADILVGGEVPFVQRDKDGELSVLYKEFGIKLAVGAKVQKSDR
IRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKVPVLGDIPILGAFFRNASSSR
ESKELVVVATVNLVKPVDGSQVLYPTFENTGTMERFFNSSSLKNVYHKTLTTNFLKNGGFIQ

Sequences:

>Translated_462_residues
MQINKFSKTLLSSALLGLLALSHSAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVI
AFDANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVIET
KLKHNDSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEVNKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGG
QLALVNSNNLNVLISALDNQNNGKILAEPNISMLSGETADILVGGEVPFVQRDKDGELSVLYKEFGIKLAVGAKVQKSDR
IRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKVPVLGDIPILGAFFRNASSSR
ESKELVVVATVNLVKPVDGSQVLYPTFENTGTMERFFNSSSLKNVYHKTLTTNFLKNGGFIQ
>Mature_462_residues
MQINKFSKTLLSSALLGLLALSHSAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVI
AFDANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVIET
KLKHNDSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEVNKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGG
QLALVNSNNLNVLISALDNQNNGKILAEPNISMLSGETADILVGGEVPFVQRDKDGELSVLYKEFGIKLAVGAKVQKSDR
IRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKVPVLGDIPILGAFFRNASSSR
ESKELVVVATVNLVKPVDGSQVLYPTFENTGTMERFFNSSSLKNVYHKTLTTNFLKNGGFIQ

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=255, Percent_Identity=30.1960784313725, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1789793, Length=230, Percent_Identity=25.6521739130435, Blast_Score=82, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 50396; Mature: 50396

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINKFSKTLLSSALLGLLALSHSAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYE
CCCHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCCHHHEECCCEEEEEEEECCCCCEEE
ILDDNSFMLYAKAEGRSEVIAFDANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLT
EECCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCEE
VKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVIETKLKHNDSEENVPFLDKYQYE
EEECCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEC
GVINNANEENATQINVKLTVAEVNKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGG
CEECCCCCCCCEEEEEEEEEEECCCCCCHHCCEEEECCCCHHHHHCCCEEEECCCCCCCC
QLALVNSNNLNVLISALDNQNNGKILAEPNISMLSGETADILVGGEVPFVQRDKDGELSV
EEEEEECCCCEEEEEEECCCCCCEEEECCCCEEECCCCEEEEECCCCCEEEECCCCCEEE
LYKEFGIKLAVGAKVQKSDRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNG
EEEHHCEEEEECCEECCCCCEEEEEECCHHHHCCCEEEEECCCCEEECCCCCCEEEECCC
ESFIISGLLNKQDIEGIKKVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGS
CEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCC
QVLYPTFENTGTMERFFNSSSLKNVYHKTLTTNFLKNGGFIQ
EEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQINKFSKTLLSSALLGLLALSHSAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYE
CCCHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCCHHHEECCCEEEEEEEECCCCCEEE
ILDDNSFMLYAKAEGRSEVIAFDANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLT
EECCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCEE
VKKVGKAYVLEGKAKNAAESDEINRIVGESLGAGKKVIETKLKHNDSEENVPFLDKYQYE
EEECCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEC
GVINNANEENATQINVKLTVAEVNKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGG
CEECCCCCCCCEEEEEEEEEEECCCCCCHHCCEEEECCCCHHHHHCCCEEEECCCCCCCC
QLALVNSNNLNVLISALDNQNNGKILAEPNISMLSGETADILVGGEVPFVQRDKDGELSV
EEEEEECCCCEEEEEEECCCCCCEEEECCCCEEECCCCEEEEECCCCCEEEECCCCCEEE
LYKEFGIKLAVGAKVQKSDRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNG
EEEHHCEEEEECCEECCCCCEEEEEECCHHHHCCCEEEEECCCCEEECCCCCCEEEECCC
ESFIISGLLNKQDIEGIKKVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGS
CEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCC
QVLYPTFENTGTMERFFNSSSLKNVYHKTLTTNFLKNGGFIQ
EEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]