Click here to switch to the map view.

The map label for this gene is ykgF [H]

Identifier: 126207929

GI number: 126207929

Start: 511197

End: 512606

Strand: Reverse

Name: ykgF [H]

Synonym: APL_0445

Alternate gene names: 126207929

Gene position: 512606-511197 (Counterclockwise)

Preceding gene: 126207930

Following gene: 126207928

Centisome position: 22.54

GC content: 45.11

Gene sequence:

>1410_bases
ATGTCACATTTACAAACCAGTACCCTACCCTTTAAGCAACGTGTAGAACAGCAAGTTCATAACGACATCATGCGCAAGGC
GGTGGTAAAAGCACAAGAAACCATCGGCGCAAACCGTCAAAAAATGGTGGATGAACTTGGAAATTGGGAAGAATGGCGTG
ATCTTTCAAAGCAATTCCGTAATCACGTTTTAGCCAATTTAGACGCTTATTTATACCAATTAAGCGAAAAGGTGACTCAA
AACGGCGGCCACGTCTTTTTTGCAGAAACCGCTGAAGAAGCGACCGCTTATATCCGTAAAGTTGCGCTTGAGAAAAATGC
AAAAACCATCGTTAAATCCAAATCAATGGTAACCGAAGAGATCGGCTTGAACCACGTATTGGAAGCGGAAGGCATGAAAG
TGGTGGAAACCGACCTTGGCGAATACTTGCTTCAAATCGTGGGCGATAAACCTTCTCACATCGTCGTACCGGCGATCCAC
AAAGATCGTCATCGTATCCGCAAAGAATTACACGAGGTATTAGGTTATGAGGGAACCGAACAACCGGAAGAAATGAACGC
TTTCGTACGTAAAACGCTACGCAAAGACTTCTTAGCCGCCGATATCGGTATTTCAGGTTGTAACTTTGCCGTGCCGGAAA
CCGGTTCCGTTTGCTTAGTGACTAATGAAGGTAACCTTCGTTTAGCCACAACTCTACCGAAAACACATATTGCGGTAATG
GGGATGGAACGTATCGCTCCGACTTTCAAAGAAGTGGACGCACTGATTACTATGTTATGTCGTAGTGCGGTAGGTGCAAA
ATTAACCGCTTATAACACTTGGCTGACCGGTCCTCGTCTTGAAGGCGAAACCGACGGTCCGGAAGATTTCCATCTTGTGA
TTGTCGATAACGGTCGTTCAAAAATTTTAGAAAGTGAATTTTCGGAAGTTTTACGTTGTATTCGCTGCGGTGCTTGTTTA
AACACTTGCCCTGCTTATCGTCAAATCGGCGGTCACGGCTACGGCTCCATCTATCCGGGTCCGATTGGTTCGGTTATTTC
GCCGTTACTTGGCGGTTATGAGGAATTTAAAGAATTACCGTATGCGTGTTCATTATGCACTGCGTGTAACAGCGTATGTC
CGGTAAAAATTCCTTTGGCGCAATTGATCCTCAAACACCGTGAAAAAATTGCCGAAGCCGGTTTAACGCCGTTCTCGGAA
CGTCTTTCAATTAAAGGTTTCACCTTTGCCAACTCAAATCCGTCAGTCTGGAATATGGGGGTTAAAGTCGGGGCGAAGAT
CGCCGGTAAATTCATTAAAAACGGTAAAGCTCCAATTCAAGTCGGTGCATTAGCCGAGTGGACAAAAGCGCGTGACTTAC
CGACTGCGGACGGTGAAAGTTTCCGTGAATGGTTTAAAAATCGTAAATAA

Upstream 100 bases:

>100_bases
TAGTTGCTTAATTAACATTGCCGGTCGTTTAAACCGTGAAGGTAAAAACGTAAAAGTTATGCACATCGCAGAAGTATTAA
TGCAAGAGTAAGGAAGCCCT

Downstream 100 bases:

>100_bases
TTTGACTTGAACCACAGCCTCTGCAAATAAGCGGTTATTTTTAGATAAAAGTTTGCAAAAATTCAATAAATTCTAACCGC
TTATTATATGAGTAAAGATT

Product: putative electron transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MSHLQTSTLPFKQRVEQQVHNDIMRKAVVKAQETIGANRQKMVDELGNWEEWRDLSKQFRNHVLANLDAYLYQLSEKVTQ
NGGHVFFAETAEEATAYIRKVALEKNAKTIVKSKSMVTEEIGLNHVLEAEGMKVVETDLGEYLLQIVGDKPSHIVVPAIH
KDRHRIRKELHEVLGYEGTEQPEEMNAFVRKTLRKDFLAADIGISGCNFAVPETGSVCLVTNEGNLRLATTLPKTHIAVM
GMERIAPTFKEVDALITMLCRSAVGAKLTAYNTWLTGPRLEGETDGPEDFHLVIVDNGRSKILESEFSEVLRCIRCGACL
NTCPAYRQIGGHGYGSIYPGPIGSVISPLLGGYEEFKELPYACSLCTACNSVCPVKIPLAQLILKHREKIAEAGLTPFSE
RLSIKGFTFANSNPSVWNMGVKVGAKIAGKFIKNGKAPIQVGALAEWTKARDLPTADGESFREWFKNRK

Sequences:

>Translated_469_residues
MSHLQTSTLPFKQRVEQQVHNDIMRKAVVKAQETIGANRQKMVDELGNWEEWRDLSKQFRNHVLANLDAYLYQLSEKVTQ
NGGHVFFAETAEEATAYIRKVALEKNAKTIVKSKSMVTEEIGLNHVLEAEGMKVVETDLGEYLLQIVGDKPSHIVVPAIH
KDRHRIRKELHEVLGYEGTEQPEEMNAFVRKTLRKDFLAADIGISGCNFAVPETGSVCLVTNEGNLRLATTLPKTHIAVM
GMERIAPTFKEVDALITMLCRSAVGAKLTAYNTWLTGPRLEGETDGPEDFHLVIVDNGRSKILESEFSEVLRCIRCGACL
NTCPAYRQIGGHGYGSIYPGPIGSVISPLLGGYEEFKELPYACSLCTACNSVCPVKIPLAQLILKHREKIAEAGLTPFSE
RLSIKGFTFANSNPSVWNMGVKVGAKIAGKFIKNGKAPIQVGALAEWTKARDLPTADGESFREWFKNRK
>Mature_468_residues
SHLQTSTLPFKQRVEQQVHNDIMRKAVVKAQETIGANRQKMVDELGNWEEWRDLSKQFRNHVLANLDAYLYQLSEKVTQN
GGHVFFAETAEEATAYIRKVALEKNAKTIVKSKSMVTEEIGLNHVLEAEGMKVVETDLGEYLLQIVGDKPSHIVVPAIHK
DRHRIRKELHEVLGYEGTEQPEEMNAFVRKTLRKDFLAADIGISGCNFAVPETGSVCLVTNEGNLRLATTLPKTHIAVMG
MERIAPTFKEVDALITMLCRSAVGAKLTAYNTWLTGPRLEGETDGPEDFHLVIVDNGRSKILESEFSEVLRCIRCGACLN
TCPAYRQIGGHGYGSIYPGPIGSVISPLLGGYEEFKELPYACSLCTACNSVCPVKIPLAQLILKHREKIAEAGLTPFSER
LSIKGFTFANSNPSVWNMGVKVGAKIAGKFIKNGKAPIQVGALAEWTKARDLPTADGESFREWFKNRK

Specific function: Unknown

COG id: COG1139

COG function: function code C; Uncharacterized conserved protein containing a ferredoxin-like domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786498, Length=466, Percent_Identity=70.3862660944206, Blast_Score=721, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003741
- InterPro:   IPR004452
- InterPro:   IPR002698
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 52028; Mature: 51897

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHLQTSTLPFKQRVEQQVHNDIMRKAVVKAQETIGANRQKMVDELGNWEEWRDLSKQFR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHH
NHVLANLDAYLYQLSEKVTQNGGHVFFAETAEEATAYIRKVALEKNAKTIVKSKSMVTEE
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IGLNHVLEAEGMKVVETDLGEYLLQIVGDKPSHIVVPAIHKDRHRIRKELHEVLGYEGTE
HCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCC
QPEEMNAFVRKTLRKDFLAADIGISGCNFAVPETGSVCLVTNEGNLRLATTLPKTHIAVM
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCHHHHHH
GMERIAPTFKEVDALITMLCRSAVGAKLTAYNTWLTGPRLEGETDGPEDFHLVIVDNGRS
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCHH
KILESEFSEVLRCIRCGACLNTCPAYRQIGGHGYGSIYPGPIGSVISPLLGGYEEFKELP
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCC
YACSLCTACNSVCPVKIPLAQLILKHREKIAEAGLTPFSERLSIKGFTFANSNPSVWNMG
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCEECEEEEECCCCCEEEHH
VKVGAKIAGKFIKNGKAPIQVGALAEWTKARDLPTADGESFREWFKNRK
HHHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
SHLQTSTLPFKQRVEQQVHNDIMRKAVVKAQETIGANRQKMVDELGNWEEWRDLSKQFR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHH
NHVLANLDAYLYQLSEKVTQNGGHVFFAETAEEATAYIRKVALEKNAKTIVKSKSMVTEE
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IGLNHVLEAEGMKVVETDLGEYLLQIVGDKPSHIVVPAIHKDRHRIRKELHEVLGYEGTE
HCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCC
QPEEMNAFVRKTLRKDFLAADIGISGCNFAVPETGSVCLVTNEGNLRLATTLPKTHIAVM
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCHHHHHH
GMERIAPTFKEVDALITMLCRSAVGAKLTAYNTWLTGPRLEGETDGPEDFHLVIVDNGRS
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCHH
KILESEFSEVLRCIRCGACLNTCPAYRQIGGHGYGSIYPGPIGSVISPLLGGYEEFKELP
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCC
YACSLCTACNSVCPVKIPLAQLILKHREKIAEAGLTPFSERLSIKGFTFANSNPSVWNMG
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCEECEEEEECCCCCEEEHH
VKVGAKIAGKFIKNGKAPIQVGALAEWTKARDLPTADGESFREWFKNRK
HHHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]