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The map label for this gene is slyB [H]

Identifier: 126207525

GI number: 126207525

Start: 41169

End: 41633

Strand: Reverse

Name: slyB [H]

Synonym: APL_0037

Alternate gene names: 126207525

Gene position: 41633-41169 (Counterclockwise)

Preceding gene: 126207526

Following gene: 126207524

Centisome position: 1.83

GC content: 48.39

Gene sequence:

>465_bases
ATGAAAAAATTTAGTTTAGCAGCGGCTTTATTTACAAGTTTAACCCTTGTCGGTTGTGCAAATACCGATATTTACAGCGG
TAGCGTTTATAACTCAAGCCAAGCGAAAGAAGCGCGTTCAATTAGCTACGGTACCATCGTATCCGTACGTGACGTCAAAA
TTCAAGCGGATAACCAAGGCGTATTGGGAACGCTCGGCGGCGGTGCGCTCGGCGGTATTACCGGTTCGACTATCGGTGGC
GGTAGCGGCCGTGCGGTAGCGACGGCGGTCGGTGCGATTGCCGGTGCGGTAATCGGTAGCACGATTGAAGAAAAAGTCAG
CCAAGTTTCTTCGTTAGAAATGGTAATTCGTAAAGACGACGGTAAAGAAATCGTGGTCGTTCAGAAAAAAGAAGATGGTT
TCGTACCCGGCAAACGTGTTAGAATCGTCGGCTCCAATTCAGACTTGAACGTGTCTGTGCTGTAA

Upstream 100 bases:

>100_bases
ATTGTAATCCTTGTTGTCTAAAGCTCCACCCTTATGGTATAACTGAAATTATTCATTCAGGGAGTAATTTCTGAGCAATT
TTTCATTGGAGAAGAAAAAT

Downstream 100 bases:

>100_bases
CTTCGTTTATCTCCTAAGGATACATACATAATGAAAAAATTTTCTCTTGCTCTATTGGCGGCTGTAACACTTGCAGCTTG
TACTCAAGATTTCTATGCCG

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: 15 kDa lipoprotein; PAL cross-reacting lipoprotein [H]

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MKKFSLAAALFTSLTLVGCANTDIYSGSVYNSSQAKEARSISYGTIVSVRDVKIQADNQGVLGTLGGGALGGITGSTIGG
GSGRAVATAVGAIAGAVIGSTIEEKVSQVSSLEMVIRKDDGKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSVL

Sequences:

>Translated_154_residues
MKKFSLAAALFTSLTLVGCANTDIYSGSVYNSSQAKEARSISYGTIVSVRDVKIQADNQGVLGTLGGGALGGITGSTIGG
GSGRAVATAVGAIAGAVIGSTIEEKVSQVSSLEMVIRKDDGKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSVL
>Mature_154_residues
MKKFSLAAALFTSLTLVGCANTDIYSGSVYNSSQAKEARSISYGTIVSVRDVKIQADNQGVLGTLGGGALGGITGSTIGG
GSGRAVATAVGAIAGAVIGSTIEEKVSQVSSLEMVIRKDDGKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSVL

Specific function: Unknown

COG id: COG3133

COG function: function code M; Outer membrane lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pcp/slyB lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI48994887, Length=141, Percent_Identity=48.936170212766, Blast_Score=114, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 15622; Mature: 15622

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFSLAAALFTSLTLVGCANTDIYSGSVYNSSQAKEARSISYGTIVSVRDVKIQADNQG
CCCHHHHHHHHHHHEEEECCCCCEECCCCCCCCCHHHHHCCCCCEEEEEEEEEEEECCCC
VLGTLGGGALGGITGSTIGGGSGRAVATAVGAIAGAVIGSTIEEKVSQVSSLEMVIRKDD
EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECC
GKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSVL
CCEEEEEEECCCCCCCCCEEEEEECCCCEEEEEC
>Mature Secondary Structure
MKKFSLAAALFTSLTLVGCANTDIYSGSVYNSSQAKEARSISYGTIVSVRDVKIQADNQG
CCCHHHHHHHHHHHEEEECCCCCEECCCCCCCCCHHHHHCCCCCEEEEEEEEEEEECCCC
VLGTLGGGALGGITGSTIGGGSGRAVATAVGAIAGAVIGSTIEEKVSQVSSLEMVIRKDD
EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECC
GKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSVL
CCEEEEEEECCCCCCCCCEEEEEECCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2828309; 7542800 [H]