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The map label for this gene is tnsC [H]

Identifier: 126176539

GI number: 126176539

Start: 5098929

End: 5100587

Strand: Reverse

Name: tnsC [H]

Synonym: Sbal_4358

Alternate gene names: 126176539

Gene position: 5100587-5098929 (Counterclockwise)

Preceding gene: 126176540

Following gene: 126176538

Centisome position: 99.48

GC content: 41.05

Gene sequence:

>1659_bases
ATGGAACAACCCAATCACTTTGTTATAGCGTCTTACCAGACTACGGGCATTAAGCGTTACGATGGTAATCCATTTATTGA
AGCGCTTCCTCCTATATTGTCTGTTGCTCAAGCAGGCAACAGTATCAAGGGAAAGGTAGATTTCCATCCTTCCGATCGAC
TATCCAGTCCAAAATCCAGAATGCACATGGTCGTTTCGCTGTTGGATGATTATTTCCAGCCACTCTCACAACATGTACTG
TTGCAAGAGAAAATCGACATGATGTTACGTATGGGGTATGTCGGTCGAAATATCAGCGACGGTTCACTAAACAGGAAACT
TCAAGAAGGCTATGATCTGATCAAGTCAGGCGGAGAAATTACTGCAAATTTTAGTGTTGAAAAAACAACAGCTAGAAGCA
TGTCTTTAGTGGGTATTTCTGGCAGCGGTAAAACCAGTTCTTTAGTACGGGTGCTGGAAACTTATCCGCAAGTTATCTAC
CACGAACAACAAAACTTTTTTCAAGTGACTTATTTAAAAATTGAATGCCCTAGTAACGGCGATCTTGAGAGTCTTTGTCT
GAATTTCTTCAGTGCTGTTGATGGTGTACTGGGCACTGATTATGAACGCCGTTATGCAAAACAACGTCTTTCTGTTCCTA
AAATGCTGGCTCTGATGCGTCAAACTGCTAACAATCGTGCAATTGGAATTTTGGTTATCGACGAAATCCAACGCTTAAGC
CAGGTGCGTTCTGGCGGCAAGGAGCAAATGTTGGAATTCTTTGTCGAGCTAGTGAATACAGTCGGCATCCCTATTGTTTT
AGTTGGCACACCCAAGGCTCGCCCAATTTTCGAGTTGGAATTACAGTCTGGAAGGAGGAGTGCAGGCCTTGGTTCAATAT
ATTGGGAAACCATACAACAAAATGTAGCTAAAAGTAGCGGAAAGGAACCAAACCTAAATTGGACTCGATTCTCTGATAAC
CTTTGGAAGCATCAATGGTTAAAACACGGAGATGATCCACTCACTGATGAGATTAGAGATTGTTGGTATGATCTATCACA
AGGGGTACTAGACATTGTTGTAAAGCTTTTTGTGCTAGCTCAACTTCGTGCAATAGCTAATAAGAAAGAGCGCATCACTG
TTGGTATATTAAAATCGGTATACAAGCAGGAATTGAAACCCGTTCATCCAATGCTTGATGCTTTGCGCTCAGGTGATGCA
GATAAAATTGTGAAGTATTCTGATATGCGTGTCGTTGATCTTGATAAACGTCTCATCCAACTTGGCTCTGAAATTATGGA
GGTCGTTCAAAAACAAGAGGAACGACTTTTTGGCGGCAATCAGGAAGCCTTACGCTTGTATAATGTGATTTTGCAAATAG
AGGAAAACTTTGACGAGCAGATCGTCGTCAAACTCATTGAAAGGATTTTTGAAGAACATCCTGGACAAAGCATTCATGAA
ATGATTCCTATTTTGGTTAATTGGTATCAATCGTATGAAGAACCTGCTCGGAAAGAAAAAACAAAAACTAAAATTAAGCA
GAAAGACTGGCACGATTTAGATGTTAGTGACTTAAGGTATCAATATGCCTATTGTAAAGAAGAAAGACTATCACTGGTAG
AGAGGCTTGAGCAAAATGGCCAGATGTTTGATCTTGATGGCTGGGCGGCTGGCTTCTAA

Upstream 100 bases:

>100_bases
AACGCCAACAAACAGCAAAAGTAGTTCATCTAACTCCGCCTGAAGATAGTGATGAATACCCTGATTTTGAAGATGAATTG
TTTGATGGTGGAGACTCTTG

Downstream 100 bases:

>100_bases
TGCTTGGATTTCCGATACCTTATTCTGAGGAGCTACTTTATAGCACAATAGCAAGATCTGGTGTTCATGATGGTGATGTA
TCACCTAAGCAGTTATTGGA

Product: transposon Tn7 transposition protein TnsC

Products: NA

Alternate protein names: Protein E [H]

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MEQPNHFVIASYQTTGIKRYDGNPFIEALPPILSVAQAGNSIKGKVDFHPSDRLSSPKSRMHMVVSLLDDYFQPLSQHVL
LQEKIDMMLRMGYVGRNISDGSLNRKLQEGYDLIKSGGEITANFSVEKTTARSMSLVGISGSGKTSSLVRVLETYPQVIY
HEQQNFFQVTYLKIECPSNGDLESLCLNFFSAVDGVLGTDYERRYAKQRLSVPKMLALMRQTANNRAIGILVIDEIQRLS
QVRSGGKEQMLEFFVELVNTVGIPIVLVGTPKARPIFELELQSGRRSAGLGSIYWETIQQNVAKSSGKEPNLNWTRFSDN
LWKHQWLKHGDDPLTDEIRDCWYDLSQGVLDIVVKLFVLAQLRAIANKKERITVGILKSVYKQELKPVHPMLDALRSGDA
DKIVKYSDMRVVDLDKRLIQLGSEIMEVVQKQEERLFGGNQEALRLYNVILQIEENFDEQIVVKLIERIFEEHPGQSIHE
MIPILVNWYQSYEEPARKEKTKTKIKQKDWHDLDVSDLRYQYAYCKEERLSLVERLEQNGQMFDLDGWAAGF

Sequences:

>Translated_552_residues
MEQPNHFVIASYQTTGIKRYDGNPFIEALPPILSVAQAGNSIKGKVDFHPSDRLSSPKSRMHMVVSLLDDYFQPLSQHVL
LQEKIDMMLRMGYVGRNISDGSLNRKLQEGYDLIKSGGEITANFSVEKTTARSMSLVGISGSGKTSSLVRVLETYPQVIY
HEQQNFFQVTYLKIECPSNGDLESLCLNFFSAVDGVLGTDYERRYAKQRLSVPKMLALMRQTANNRAIGILVIDEIQRLS
QVRSGGKEQMLEFFVELVNTVGIPIVLVGTPKARPIFELELQSGRRSAGLGSIYWETIQQNVAKSSGKEPNLNWTRFSDN
LWKHQWLKHGDDPLTDEIRDCWYDLSQGVLDIVVKLFVLAQLRAIANKKERITVGILKSVYKQELKPVHPMLDALRSGDA
DKIVKYSDMRVVDLDKRLIQLGSEIMEVVQKQEERLFGGNQEALRLYNVILQIEENFDEQIVVKLIERIFEEHPGQSIHE
MIPILVNWYQSYEEPARKEKTKTKIKQKDWHDLDVSDLRYQYAYCKEERLSLVERLEQNGQMFDLDGWAAGF
>Mature_552_residues
MEQPNHFVIASYQTTGIKRYDGNPFIEALPPILSVAQAGNSIKGKVDFHPSDRLSSPKSRMHMVVSLLDDYFQPLSQHVL
LQEKIDMMLRMGYVGRNISDGSLNRKLQEGYDLIKSGGEITANFSVEKTTARSMSLVGISGSGKTSSLVRVLETYPQVIY
HEQQNFFQVTYLKIECPSNGDLESLCLNFFSAVDGVLGTDYERRYAKQRLSVPKMLALMRQTANNRAIGILVIDEIQRLS
QVRSGGKEQMLEFFVELVNTVGIPIVLVGTPKARPIFELELQSGRRSAGLGSIYWETIQQNVAKSSGKEPNLNWTRFSDN
LWKHQWLKHGDDPLTDEIRDCWYDLSQGVLDIVVKLFVLAQLRAIANKKERITVGILKSVYKQELKPVHPMLDALRSGDA
DKIVKYSDMRVVDLDKRLIQLGSEIMEVVQKQEERLFGGNQEALRLYNVILQIEENFDEQIVVKLIERIFEEHPGQSIHE
MIPILVNWYQSYEEPARKEKTKTKIKQKDWHDLDVSDLRYQYAYCKEERLSLVERLEQNGQMFDLDGWAAGF

Specific function: TnsABC + tnsD promote high-frequency insertion of Tn7 into a specific target site known as att-Tn7 whereas tnsABC + tnsE promote low-frequency insertion into many different sites [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021542 [H]

Pfam domain/function: PF00004 AAA; PF11426 Tn7_TnsC [H]

EC number: NA

Molecular weight: Translated: 63186; Mature: 63186

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQPNHFVIASYQTTGIKRYDGNPFIEALPPILSVAQAGNSIKGKVDFHPSDRLSSPKSR
CCCCCCEEEEEEECCCEEECCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHH
MHMVVSLLDDYFQPLSQHVLLQEKIDMMLRMGYVGRNISDGSLNRKLQEGYDLIKSGGEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCE
TANFSVEKTTARSMSLVGISGSGKTSSLVRVLETYPQVIYHEQQNFFQVTYLKIECPSNG
EEEEEEEHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC
DLESLCLNFFSAVDGVLGTDYERRYAKQRLSVPKMLALMRQTANNRAIGILVIDEIQRLS
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHH
QVRSGGKEQMLEFFVELVNTVGIPIVLVGTPKARPIFELELQSGRRSAGLGSIYWETIQQ
HHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHH
NVAKSSGKEPNLNWTRFSDNLWKHQWLKHGDDPLTDEIRDCWYDLSQGVLDIVVKLFVLA
HHHHCCCCCCCCCEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QLRAIANKKERITVGILKSVYKQELKPVHPMLDALRSGDADKIVKYSDMRVVDLDKRLIQ
HHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHEEEECCCEEEHHHHHHHH
LGSEIMEVVQKQEERLFGGNQEALRLYNVILQIEENFDEQIVVKLIERIFEEHPGQSIHE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
MIPILVNWYQSYEEPARKEKTKTKIKQKDWHDLDVSDLRYQYAYCKEERLSLVERLEQNG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QMFDLDGWAAGF
CEEECCCCCCCC
>Mature Secondary Structure
MEQPNHFVIASYQTTGIKRYDGNPFIEALPPILSVAQAGNSIKGKVDFHPSDRLSSPKSR
CCCCCCEEEEEEECCCEEECCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHH
MHMVVSLLDDYFQPLSQHVLLQEKIDMMLRMGYVGRNISDGSLNRKLQEGYDLIKSGGEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCE
TANFSVEKTTARSMSLVGISGSGKTSSLVRVLETYPQVIYHEQQNFFQVTYLKIECPSNG
EEEEEEEHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC
DLESLCLNFFSAVDGVLGTDYERRYAKQRLSVPKMLALMRQTANNRAIGILVIDEIQRLS
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHH
QVRSGGKEQMLEFFVELVNTVGIPIVLVGTPKARPIFELELQSGRRSAGLGSIYWETIQQ
HHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHH
NVAKSSGKEPNLNWTRFSDNLWKHQWLKHGDDPLTDEIRDCWYDLSQGVLDIVVKLFVLA
HHHHCCCCCCCCCEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QLRAIANKKERITVGILKSVYKQELKPVHPMLDALRSGDADKIVKYSDMRVVDLDKRLIQ
HHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHEEEECCCEEEHHHHHHHH
LGSEIMEVVQKQEERLFGGNQEALRLYNVILQIEENFDEQIVVKLIERIFEEHPGQSIHE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
MIPILVNWYQSYEEPARKEKTKTKIKQKDWHDLDVSDLRYQYAYCKEERLSLVERLEQNG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QMFDLDGWAAGF
CEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2156235; 3022239; 1655576; 1317955 [H]