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The map label for this gene is hslR [H]

Identifier: 126176393

GI number: 126176393

Start: 4928839

End: 4929237

Strand: Direct

Name: hslR [H]

Synonym: Sbal_4208

Alternate gene names: 126176393

Gene position: 4928839-4929237 (Clockwise)

Preceding gene: 126176380

Following gene: 126176394

Centisome position: 96.13

GC content: 45.86

Gene sequence:

>399_bases
ATGACTCAAGGTCAAAGCGACAAAACAGACATTCGACTCGATAAGTGGCTTTGGGCTGCACGTTTCTATAAAACCCGTGC
CATCGCCAAAGAAATGATTAACGGCGGCAAAGTACATTACAACGGCCAGCGCGCCAAATCTAGTAGGAATGCCGAGATAG
GCGCCGTCCTTAAGATACGCCAAGGATATGACGATAAAGAGATCGTCATAAAAAAATTATCGCAATTACGCCAAAGTGGT
GCGATTGCACAAGAATTGTACGAAGAAACCGCGACTAGTCTGGCTAAACGGGCCATTAATGCTGAGCAACGACGTCTCCA
CATGCTTAATAACCCGATACCCGATCAGAAACCAGATAAAAAGCAACGACGCCAGCTCATGCGCTTTAAAGACCTTTAA

Upstream 100 bases:

>100_bases
AAAGGGTGTGAAGCACGCCACCCTTTAACATAATAGAAATGCACTTCACGCATTTTCTTGCTCGGCATGTGAACTCATCG
ATCTTTTAGCTGGAGACACT

Downstream 100 bases:

>100_bases
CAGTGAGATACACGATGAACCAAGATACTTTACACCGCTACTTGTTCGACAATGCCGATGTGCGTGGTGAACTGGTGCAG
TTACAAGACAGCTATCAACA

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MTQGQSDKTDIRLDKWLWAARFYKTRAIAKEMINGGKVHYNGQRAKSSRNAEIGAVLKIRQGYDDKEIVIKKLSQLRQSG
AIAQELYEETATSLAKRAINAEQRRLHMLNNPIPDQKPDKKQRRQLMRFKDL

Sequences:

>Translated_132_residues
MTQGQSDKTDIRLDKWLWAARFYKTRAIAKEMINGGKVHYNGQRAKSSRNAEIGAVLKIRQGYDDKEIVIKKLSQLRQSG
AIAQELYEETATSLAKRAINAEQRRLHMLNNPIPDQKPDKKQRRQLMRFKDL
>Mature_131_residues
TQGQSDKTDIRLDKWLWAARFYKTRAIAKEMINGGKVHYNGQRAKSSRNAEIGAVLKIRQGYDDKEIVIKKLSQLRQSGA
IAQELYEETATSLAKRAINAEQRRLHMLNNPIPDQKPDKKQRRQLMRFKDL

Specific function: Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=122, Percent_Identity=55.7377049180328, Blast_Score=148, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 15325; Mature: 15194

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQGQSDKTDIRLDKWLWAARFYKTRAIAKEMINGGKVHYNGQRAKSSRNAEIGAVLKIR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCCHHHHHHHC
QGYDDKEIVIKKLSQLRQSGAIAQELYEETATSLAKRAINAEQRRLHMLNNPIPDQKPDK
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
KQRRQLMRFKDL
HHHHHHHHHCCC
>Mature Secondary Structure 
TQGQSDKTDIRLDKWLWAARFYKTRAIAKEMINGGKVHYNGQRAKSSRNAEIGAVLKIR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCCHHHHHHHC
QGYDDKEIVIKKLSQLRQSGAIAQELYEETATSLAKRAINAEQRRLHMLNNPIPDQKPDK
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
KQRRQLMRFKDL
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]