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The map label for this gene is yoaB [C]

Identifier: 126176242

GI number: 126176242

Start: 4764969

End: 4765331

Strand: Reverse

Name: yoaB [C]

Synonym: Sbal_4056

Alternate gene names: 126176242

Gene position: 4765331-4764969 (Counterclockwise)

Preceding gene: 126176243

Following gene: 126176239

Centisome position: 92.94

GC content: 50.14

Gene sequence:

>363_bases
ATGACCAATATGAGCATTACCCGTTTAGACGTTGGCACCCGCATGAGCAGCATAGTCATTCACCAAGGTACTGTGTATCT
GTGTGGCCAAGTGGCGAAGGATAAGTATCAAGATATCACTGAGCAAACCGTCACTATGCTTGAAGAAGTCGATACCTTGT
TGGCGCAGGCGGGGAGTTCGCGTGAGCATGTATTGTCAGCGACTATCTATCTGAAAGACATGGGTGATTACGATGCGATG
AATGCCGTATGGGATGCTTGGGTGCCTAAAGGCCATGCGCCAGCCCGCGCTTGCGTGCAAGCTGTTATTGCTGAACCGGA
ATATTTGGTTGAAGTGTCTGTGATTGCGGCGGTCGCGGTTTAA

Upstream 100 bases:

>100_bases
CTTGGCCTAAGTTAGCGGCGCAGACATAACGCCTGTTTATCGTTAAAATGGCCTATTCGGTTTGAGCTGAACCCTTTATT
TCAATGTACTGATTTAAGAG

Downstream 100 bases:

>100_bases
GCGCTAAGCTATTTTTCGCCCTGTTTAGAATCTTGTCACCGAGTGTCATGACTCGGTGAAGCTTTTCTGCAATACACCTC
GCTAACTAAACCTGCATTGT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MTNMSITRLDVGTRMSSIVIHQGTVYLCGQVAKDKYQDITEQTVTMLEEVDTLLAQAGSSREHVLSATIYLKDMGDYDAM
NAVWDAWVPKGHAPARACVQAVIAEPEYLVEVSVIAAVAV

Sequences:

>Translated_120_residues
MTNMSITRLDVGTRMSSIVIHQGTVYLCGQVAKDKYQDITEQTVTMLEEVDTLLAQAGSSREHVLSATIYLKDMGDYDAM
NAVWDAWVPKGHAPARACVQAVIAEPEYLVEVSVIAAVAV
>Mature_119_residues
TNMSITRLDVGTRMSSIVIHQGTVYLCGQVAKDKYQDITEQTVTMLEEVDTLLAQAGSSREHVLSATIYLKDMGDYDAMN
AVWDAWVPKGHAPARACVQAVIAEPEYLVEVSVIAAVAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=115, Percent_Identity=45.2173913043478, Blast_Score=109, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13073; Mature: 12942

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNMSITRLDVGTRMSSIVIHQGTVYLCGQVAKDKYQDITEQTVTMLEEVDTLLAQAGSS
CCCCEEEEEECCCCHHHEEEECCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
REHVLSATIYLKDMGDYDAMNAVWDAWVPKGHAPARACVQAVIAEPEYLVEVSVIAAVAV
CHHHEEEEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNMSITRLDVGTRMSSIVIHQGTVYLCGQVAKDKYQDITEQTVTMLEEVDTLLAQAGSS
CCCEEEEEECCCCHHHEEEECCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
REHVLSATIYLKDMGDYDAMNAVWDAWVPKGHAPARACVQAVIAEPEYLVEVSVIAAVAV
CHHHEEEEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA