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The map label for this gene is bepC [H]

Identifier: 126176194

GI number: 126176194

Start: 4703320

End: 4704738

Strand: Direct

Name: bepC [H]

Synonym: Sbal_4007

Alternate gene names: 126176194

Gene position: 4703320-4704738 (Clockwise)

Preceding gene: 126176193

Following gene: 126176195

Centisome position: 91.73

GC content: 46.16

Gene sequence:

>1419_bases
ATGAAGACTTCAGCAAGACGACAATTTCAATGTTCAAAGATAGCCATAGTGCTGTCATTGATCCTGTTACCTTTATCGGC
TCAAAGCCAGACGTTAGAACAAGCCGTTGCACATACGCTTGATACGAACCCTGATTTACGGGTTGCCTTTAACCGCTTTA
AAGCGCGTGAAGAGCAAGTTAATCAAGCAATCGCAGGCTATATGCCGACGATTGATGTCAGTGGTGGCTACGGCTATGAA
CAGACTGATAGCGTGTCGACCCGTAGACGACCTAACGTCGGTGAAGTTGATAGCAAAGGAGTGGCAGAATTAAACCGCGG
AGAGTTTGGTGTTAGCTTAAAGCAAATGCTTTTCGATGGTTTCTATACTAGCAGTGAAGTTGATCGTTATAGCTTTGAAG
CCAGTGCCGACCAATGGGCGCTACTTGCAGCGGCTGAAGATATGGCACTCGATGTCAGTAAGGTCTACCTCAACTATTTA
CGCACCGATCAGGTGTTGAAATTAGCCGAGAAGAACCTTAACAGCCATAAAGATATTTATGACCAAATCAAGCAACGTAC
TGATTCAGGTTTAGGTTCAATTGCAGATCTCTCCCAAATCACGGGACGCTTAGCGCGGGCCAATGCCAACGTGATTTCTG
CTCGTAACAATTTACTTGATGCAAAAGCGCAGTACATTAGAATTGTAGAGTCGGCACCAGCAGACTTAATCTTACCAGTG
CCCGATGCAGAGATGCTGCCAAAGGATCTAAGCTCAGGCATTATCGAAGCGCAGGAGAATCACCCCATACTCAAATCTGC
AGCGAATGATATCCGTGCAGCAGAGAATGAACGCTCTTCAGTACAATCTAATTACTATCCTCAGGTTTCTTTAGAGCTGA
ATGGTAATTGGAATAATGATGTCGGCGGTGAAGATGGTATCTCTGGCGCAGGAGCCTTCCGCAGTGATGTGGGTGGCTAT
AGCAATGATTTAATGGCCATGGTTCGAGTAAAATATAACTTATTCTCGGGCGGTAAAGATCTTGCCCGTGAGAAAGAAAC
GGCCTACAAACTTGGTGAAGCCAAAGAAATCCGTCAACGTGCCCAGCGCGAAGTCGTTGAAGGCGTCAACCTAGCTTGGA
ACGCTTTTGAAATGCTAGCGCCGCAAAAACAATACATTCGAGATCATGTTGTGGCCGCAAAGGATACCCAAACAGCCTAT
GCGCAACAGTTCAACTTAGGCCAACGCAGCCTACTCGACTTATTGGATACCGAAAATGAGCTCTTCGAAGCACGTAAAGA
CTACTTACAAGCCGAATATGACGAGATCATCGCTAAGTATCGCGTGCTAAATTCTACTGGACGCTTATTAGACTCACTCA
GAGTCACCAGACCTGAAGCATGGCGTGGTGAGCGCAACTATGAAGGAGGAGCTAACTAA

Upstream 100 bases:

>100_bases
AAAGATCCATACTTGAGTACATTTTAAATCCAATTTTAAGGGCTAAGGACACAGCGCTAAGAGAGCACTAAGCCTTTTTT
TATAAACCGGGAGGTTGATC

Downstream 100 bases:

>100_bases
TGAAAACTCTCACATTTTTTCTCAGTGTCACTCTTTTAGCTGGTTGTTCAATGCGCGATACAGTTAATATTGACGAAATG
ACCACAACCCAAGCCTATGA

Product: TolC family type I secretion outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MKTSARRQFQCSKIAIVLSLILLPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTIDVSGGYGYE
QTDSVSTRRRPNVGEVDSKGVAELNRGEFGVSLKQMLFDGFYTSSEVDRYSFEASADQWALLAAAEDMALDVSKVYLNYL
RTDQVLKLAEKNLNSHKDIYDQIKQRTDSGLGSIADLSQITGRLARANANVISARNNLLDAKAQYIRIVESAPADLILPV
PDAEMLPKDLSSGIIEAQENHPILKSAANDIRAAENERSSVQSNYYPQVSLELNGNWNNDVGGEDGISGAGAFRSDVGGY
SNDLMAMVRVKYNLFSGGKDLAREKETAYKLGEAKEIRQRAQREVVEGVNLAWNAFEMLAPQKQYIRDHVVAAKDTQTAY
AQQFNLGQRSLLDLLDTENELFEARKDYLQAEYDEIIAKYRVLNSTGRLLDSLRVTRPEAWRGERNYEGGAN

Sequences:

>Translated_472_residues
MKTSARRQFQCSKIAIVLSLILLPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTIDVSGGYGYE
QTDSVSTRRRPNVGEVDSKGVAELNRGEFGVSLKQMLFDGFYTSSEVDRYSFEASADQWALLAAAEDMALDVSKVYLNYL
RTDQVLKLAEKNLNSHKDIYDQIKQRTDSGLGSIADLSQITGRLARANANVISARNNLLDAKAQYIRIVESAPADLILPV
PDAEMLPKDLSSGIIEAQENHPILKSAANDIRAAENERSSVQSNYYPQVSLELNGNWNNDVGGEDGISGAGAFRSDVGGY
SNDLMAMVRVKYNLFSGGKDLAREKETAYKLGEAKEIRQRAQREVVEGVNLAWNAFEMLAPQKQYIRDHVVAAKDTQTAY
AQQFNLGQRSLLDLLDTENELFEARKDYLQAEYDEIIAKYRVLNSTGRLLDSLRVTRPEAWRGERNYEGGAN
>Mature_472_residues
MKTSARRQFQCSKIAIVLSLILLPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTIDVSGGYGYE
QTDSVSTRRRPNVGEVDSKGVAELNRGEFGVSLKQMLFDGFYTSSEVDRYSFEASADQWALLAAAEDMALDVSKVYLNYL
RTDQVLKLAEKNLNSHKDIYDQIKQRTDSGLGSIADLSQITGRLARANANVISARNNLLDAKAQYIRIVESAPADLILPV
PDAEMLPKDLSSGIIEAQENHPILKSAANDIRAAENERSSVQSNYYPQVSLELNGNWNNDVGGEDGISGAGAFRSDVGGY
SNDLMAMVRVKYNLFSGGKDLAREKETAYKLGEAKEIRQRAQREVVEGVNLAWNAFEMLAPQKQYIRDHVVAAKDTQTAY
AQQFNLGQRSLLDLLDTENELFEARKDYLQAEYDEIIAKYRVLNSTGRLLDSLRVTRPEAWRGERNYEGGAN

Specific function: Involved in the efflux of toxic and relatively hydrophobic compounds. Influences survival inside the host [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=433, Percent_Identity=21.7090069284065, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 52544; Mature: 52544

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSARRQFQCSKIAIVLSLILLPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQV
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
NQAIAGYMPTIDVSGGYGYEQTDSVSTRRRPNVGEVDSKGVAELNRGEFGVSLKQMLFDG
HHHHHCCCCEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHC
FYTSSEVDRYSFEASADQWALLAAAEDMALDVSKVYLNYLRTDQVLKLAEKNLNSHKDIY
CCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DQIKQRTDSGLGSIADLSQITGRLARANANVISARNNLLDAKAQYIRIVESAPADLILPV
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
PDAEMLPKDLSSGIIEAQENHPILKSAANDIRAAENERSSVQSNYYPQVSLELNGNWNND
CCHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
VGGEDGISGAGAFRSDVGGYSNDLMAMVRVKYNLFSGGKDLAREKETAYKLGEAKEIRQR
CCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHH
AQREVVEGVNLAWNAFEMLAPQKQYIRDHVVAAKDTQTAYAQQFNLGQRSLLDLLDTENE
HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCHHH
LFEARKDYLQAEYDEIIAKYRVLNSTGRLLDSLRVTRPEAWRGERNYEGGAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure
MKTSARRQFQCSKIAIVLSLILLPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQV
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
NQAIAGYMPTIDVSGGYGYEQTDSVSTRRRPNVGEVDSKGVAELNRGEFGVSLKQMLFDG
HHHHHCCCCEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHC
FYTSSEVDRYSFEASADQWALLAAAEDMALDVSKVYLNYLRTDQVLKLAEKNLNSHKDIY
CCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DQIKQRTDSGLGSIADLSQITGRLARANANVISARNNLLDAKAQYIRIVESAPADLILPV
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
PDAEMLPKDLSSGIIEAQENHPILKSAANDIRAAENERSSVQSNYYPQVSLELNGNWNND
CCHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
VGGEDGISGAGAFRSDVGGYSNDLMAMVRVKYNLFSGGKDLAREKETAYKLGEAKEIRQR
CCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHH
AQREVVEGVNLAWNAFEMLAPQKQYIRDHVVAAKDTQTAYAQQFNLGQRSLLDLLDTENE
HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCHHH
LFEARKDYLQAEYDEIIAKYRVLNSTGRLLDSLRVTRPEAWRGERNYEGGAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]