Click here to switch to the map view.

The map label for this gene is flgF [H]

Identifier: 126176155

GI number: 126176155

Start: 4658813

End: 4659547

Strand: Reverse

Name: flgF [H]

Synonym: Sbal_3967

Alternate gene names: 126176155

Gene position: 4659547-4658813 (Counterclockwise)

Preceding gene: 126176156

Following gene: 126176154

Centisome position: 90.88

GC content: 47.62

Gene sequence:

>735_bases
ATGGAGAAGATGCTTTATACCGCTGCCAGTGGTGCAGTTCGTATTCTTGAGGCGCAAAGTATTCGCGCGAATAATTTGGC
TAACGCTGAAACCGCTGGATTTAAAGCCGACCTTGAGCGCGTGAATGCCGTGCCTTTAGTTGCCCAAGGCAATAGTTTGA
ATACAAGAGTCATGGCACAGACTGAAAGCAGTGGTTTTAGTCAACAAAGTGGGGTGATCAATCCTACTGGCCGTTCATTG
GATTTAGCGATCCGCGATCGTGGCTTGTTCAGTGTGGCTGTTGACGGTGCAGAAGCTTATACCCGTTCAGGTGCAATCGA
GACCAATGCCGAGGGGCAACTAACTATTGATGGTCGGCCAGTATTAGGCATTGATGGCCCAATAGCGTTACCTGAGTATA
AAGATGTGTTTGTGGGCGAAGACGGTACAGTCAGTGTCTTACCTGCAGAAGGTGGGATCATTGAGGAAGTGGGTCGATTA
AAGCTAGTGAATCCAGACTTTGCTTTAATGCAAAAAGGGCAAGATGGGTTGCTCTATCGTCGTGATGGCCAAGCAGTGCC
ACAAGATGAAGGCGTATTAGTCGATAGTGGCTTCCTTGAGTCGAGTAACGTGCAGGCCGTGTCAGAGCTGATTGCATCTA
TGGATTTGAGTCGTCAATTTGAGATTCAAGTTAAGTTAATGAAAAGTGCAGAAAAGCTGGCCGAGGCTGGTAATCGTCTG
CTGGGCAATGTTTAA

Upstream 100 bases:

>100_bases
TGTCTGCTCAGCGTAACTATCAGTCCAACGCCAAAGTCCTCGATGTGAACTCGACTATGCAGCAAGCATTGCTTAATGCT
ATTTAAAAAGAGGCACTGAC

Downstream 100 bases:

>100_bases
GGATTAGTGGTATGCAATCAGCGTTATGGGTAAGTAAAACCGGCCTAACAGCACAAGATACGAAAATGACCGCGATTGCC
AACAACTTGGCAAACGTGAA

Product: flagellar basal-body rod protein FlgF

Products: NA

Alternate protein names: Putative proximal rod protein [H]

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MEKMLYTAASGAVRILEAQSIRANNLANAETAGFKADLERVNAVPLVAQGNSLNTRVMAQTESSGFSQQSGVINPTGRSL
DLAIRDRGLFSVAVDGAEAYTRSGAIETNAEGQLTIDGRPVLGIDGPIALPEYKDVFVGEDGTVSVLPAEGGIIEEVGRL
KLVNPDFALMQKGQDGLLYRRDGQAVPQDEGVLVDSGFLESSNVQAVSELIASMDLSRQFEIQVKLMKSAEKLAEAGNRL
LGNV

Sequences:

>Translated_244_residues
MEKMLYTAASGAVRILEAQSIRANNLANAETAGFKADLERVNAVPLVAQGNSLNTRVMAQTESSGFSQQSGVINPTGRSL
DLAIRDRGLFSVAVDGAEAYTRSGAIETNAEGQLTIDGRPVLGIDGPIALPEYKDVFVGEDGTVSVLPAEGGIIEEVGRL
KLVNPDFALMQKGQDGLLYRRDGQAVPQDEGVLVDSGFLESSNVQAVSELIASMDLSRQFEIQVKLMKSAEKLAEAGNRL
LGNV
>Mature_244_residues
MEKMLYTAASGAVRILEAQSIRANNLANAETAGFKADLERVNAVPLVAQGNSLNTRVMAQTESSGFSQQSGVINPTGRSL
DLAIRDRGLFSVAVDGAEAYTRSGAIETNAEGQLTIDGRPVLGIDGPIALPEYKDVFVGEDGTVSVLPAEGGIIEEVGRL
KLVNPDFALMQKGQDGLLYRRDGQAVPQDEGVLVDSGFLESSNVQAVSELIASMDLSRQFEIQVKLMKSAEKLAEAGNRL
LGNV

Specific function: Unknown

COG id: COG4787

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787317, Length=253, Percent_Identity=39.9209486166008, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1787318, Length=270, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 25881; Mature: 25881

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKMLYTAASGAVRILEAQSIRANNLANAETAGFKADLERVNAVPLVAQGNSLNTRVMAQ
CCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCEEEEEE
TESSGFSQQSGVINPTGRSLDLAIRDRGLFSVAVDGAEAYTRSGAIETNAEGQLTIDGRP
ECCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCHHHHHCCCCEEECCCCEEEECCCE
VLGIDGPIALPEYKDVFVGEDGTVSVLPAEGGIIEEVGRLKLVNPDFALMQKGQDGLLYR
EECCCCCEECCCCCEEEECCCCEEEEEECCCCHHHHCCCEEEECCCHHHHHCCCCCEEEE
RDGQAVPQDEGVLVDSGFLESSNVQAVSELIASMDLSRQFEIQVKLMKSAEKLAEAGNRL
ECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH
LGNV
HCCC
>Mature Secondary Structure
MEKMLYTAASGAVRILEAQSIRANNLANAETAGFKADLERVNAVPLVAQGNSLNTRVMAQ
CCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCEEEEEE
TESSGFSQQSGVINPTGRSLDLAIRDRGLFSVAVDGAEAYTRSGAIETNAEGQLTIDGRP
ECCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCHHHHHCCCCEEECCCCEEEECCCE
VLGIDGPIALPEYKDVFVGEDGTVSVLPAEGGIIEEVGRLKLVNPDFALMQKGQDGLLYR
EECCCCCEECCCCCEEEECCCCEEEEEECCCCHHHHCCCEEEECCCHHHHHCCCCCEEEE
RDGQAVPQDEGVLVDSGFLESSNVQAVSELIASMDLSRQFEIQVKLMKSAEKLAEAGNRL
ECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH
LGNV
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]