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The map label for this gene is yggB [C]

Identifier: 126176047

GI number: 126176047

Start: 4530091

End: 4530927

Strand: Direct

Name: yggB [C]

Synonym: Sbal_3856

Alternate gene names: 126176047

Gene position: 4530091-4530927 (Clockwise)

Preceding gene: 126176044

Following gene: 126176048

Centisome position: 88.35

GC content: 45.88

Gene sequence:

>837_bases
ATGATAACACCTGGACTCGATCAGGAATTGCAGCAACTACAAGGCGTTTATCAGCTGATCACAGAGTTTCTAGTCACCTA
CAGCTTCCAATTGGTCGGCGCTTTGCTGATCTTTTTACTGGGTTTGTGGGTCGCTAGTAAGGCATCACGTTTAGTCGCAA
AACAGTTCGAAAAACACAATATCGACATTACCTTAAGCAATTTTGTCAGTAACCTTATCCGCATTCTGATCATCATCATG
GTCGGGATCATCGCCCTCGGCAAAATTGGCATCAGCGTCACCCCTATGGTAGCAGCCATTGGTGCAGCCTCCTTAGGTGC
TGGCTTAGCCTTACAAGGCATGTTAGCCAACTATGCCGCCGGCGTGACCATTATCGTCACCCGTCCTTTCGTTGTGGGAA
ACACTATCGAAATCAAAGGGGAAAGCGGCGTCGTTAAACGTATTCACTTAGGCATGACCATTCTGAGTAATGAGGAAGGC
GAACAAATCAGCATTCCCAATAAGCATATCGTCGGTGAGATCCTGCATAATTCCTTTAGCAATAAACTGGTCGAAACCCA
GTTTAATCTCAGTTACAACACAGATCCCGAACGGGCCATTAGTGTGATCACTGAGTTATTGAGCAACAATCCCTATGTCT
ATCAAGAGACCATGCCCAATATCGGCATCAATGGTTTTAATGCTATCGGGATTGAAATGGGAGTGCGCTATTGGGTGCCC
ACGCAAAGCTATTTTCAGCATAAATATAAGGTGAACTTAGCACTCTACAACGCCCTTAAGCAGGCGGGAATCGAGATTGC
CTGCCCCATCAGAGAGATCCATCTGCAAGATAAATAA

Upstream 100 bases:

>100_bases
CGCGATTACATGATACGCTTCACACATGCATGGCGAATAAGTATTTCATGGGATTTCTGCGCTATAATCGCACAGTTAAG
TTTATTACAAGGATATCATA

Downstream 100 bases:

>100_bases
CGCTAATGATCATGGGGTTGACCGGCGTAGTCGGTCAACCTAGCCCACATTGTAAACTTGCATTCTTGTACGAATTTACG
TTTACTATGCTCCCAAATAT

Product: mechanosensitive ion channel protein MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MITPGLDQELQQLQGVYQLITEFLVTYSFQLVGALLIFLLGLWVASKASRLVAKQFEKHNIDITLSNFVSNLIRILIIIM
VGIIALGKIGISVTPMVAAIGAASLGAGLALQGMLANYAAGVTIIVTRPFVVGNTIEIKGESGVVKRIHLGMTILSNEEG
EQISIPNKHIVGEILHNSFSNKLVETQFNLSYNTDPERAISVITELLSNNPYVYQETMPNIGINGFNAIGIEMGVRYWVP
TQSYFQHKYKVNLALYNALKQAGIEIACPIREIHLQDK

Sequences:

>Translated_278_residues
MITPGLDQELQQLQGVYQLITEFLVTYSFQLVGALLIFLLGLWVASKASRLVAKQFEKHNIDITLSNFVSNLIRILIIIM
VGIIALGKIGISVTPMVAAIGAASLGAGLALQGMLANYAAGVTIIVTRPFVVGNTIEIKGESGVVKRIHLGMTILSNEEG
EQISIPNKHIVGEILHNSFSNKLVETQFNLSYNTDPERAISVITELLSNNPYVYQETMPNIGINGFNAIGIEMGVRYWVP
TQSYFQHKYKVNLALYNALKQAGIEIACPIREIHLQDK
>Mature_278_residues
MITPGLDQELQQLQGVYQLITEFLVTYSFQLVGALLIFLLGLWVASKASRLVAKQFEKHNIDITLSNFVSNLIRILIIIM
VGIIALGKIGISVTPMVAAIGAASLGAGLALQGMLANYAAGVTIIVTRPFVVGNTIEIKGESGVVKRIHLGMTILSNEEG
EQISIPNKHIVGEILHNSFSNKLVETQFNLSYNTDPERAISVITELLSNNPYVYQETMPNIGINGFNAIGIEMGVRYWVP
TQSYFQHKYKVNLALYNALKQAGIEIACPIREIHLQDK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=258, Percent_Identity=29.8449612403101, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1786670, Length=208, Percent_Identity=27.4038461538462, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787591, Length=240, Percent_Identity=22.5, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367355, Length=105, Percent_Identity=26.6666666666667, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 30538; Mature: 30538

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITPGLDQELQQLQGVYQLITEFLVTYSFQLVGALLIFLLGLWVASKASRLVAKQFEKHN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IDITLSNFVSNLIRILIIIMVGIIALGKIGISVTPMVAAIGAASLGAGLALQGMLANYAA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHC
GVTIIVTRPFVVGNTIEIKGESGVVKRIHLGMTILSNEEGEQISIPNKHIVGEILHNSFS
CEEEEEECCEEECCEEEECCCCCCCHHHEECEEEEECCCCCEEECCCHHHHHHHHHHHHH
NKLVETQFNLSYNTDPERAISVITELLSNNPYVYQETMPNIGINGFNAIGIEMGVRYWVP
CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEHHHHCCEEECC
TQSYFQHKYKVNLALYNALKQAGIEIACPIREIHLQDK
CHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHCCCCCC
>Mature Secondary Structure
MITPGLDQELQQLQGVYQLITEFLVTYSFQLVGALLIFLLGLWVASKASRLVAKQFEKHN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IDITLSNFVSNLIRILIIIMVGIIALGKIGISVTPMVAAIGAASLGAGLALQGMLANYAA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHC
GVTIIVTRPFVVGNTIEIKGESGVVKRIHLGMTILSNEEGEQISIPNKHIVGEILHNSFS
CEEEEEECCEEECCEEEECCCCCCCHHHEECEEEEECCCCCEEECCCHHHHHHHHHHHHH
NKLVETQFNLSYNTDPERAISVITELLSNNPYVYQETMPNIGINGFNAIGIEMGVRYWVP
CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEHHHHCCEEECC
TQSYFQHKYKVNLALYNALKQAGIEIACPIREIHLQDK
CHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]